Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008377.1 Length=2792 Score E Sequences producing significant alignments: (Bits) Value seq16 120 5e-24 seq11 100 5e-18 seq13 98.7 2e-17 >seq16 Length=188620566 Score = 120 bits (132), Expect = 5e-24 Identities = 189/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 1754 CTTTAATTTGAATTGGTTTCCCGTACTT-CGTGTTGCTCTGCCAGTCCCTCTGGGCCCCC 1812 |||| || |||| ||||| | |||||| | ||||| |||||||| || || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCT-TGCCAGTCTCTTTGTGCACCA 2249275 Query 1813 ATGAATTCTTTAAAGTGTTTGAGATAATGCGGGTCAACATCATCTATGACGTTATA--CC 1870 | ||||| || ||||||| | | | || |||| ||| | ||| || |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1871 ATGCTTCATTTGAATAGACCCTTGGGCTAAGATCTATATGACCACATAGATAATTATGTG 1930 | | || || || | ||| | || | | |||| || ||||| || |||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1931 GGCCTAAGGACCTAGCCCACATTGTCTTCCCTGTTCTACTATCACCCTCAACAACTATAC 1990 || || || || |||||||||||||| || ||||| |||||| |||| | ||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1991 TTTGAGGTCTCCAGGGCCGCGCAGCG 2016 ||||||||| | || || | |||| Sbjct 2249096 ACTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 100 bits (110), Expect = 5e-18 Identities = 237/356 (67%), Gaps = 13/356 (4%) Strand=Plus/Minus Query 1720 CCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTAC 1779 || || ||||| || | ||||||||| || |||||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1780 TTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTGAGATAA 1839 || || |||||| | | || || || || || ||||| |||| ||| || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1840 TGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACCCTTGGGCTA 1899 || || | ||||| |||| ||| || || | ||||| |||| || | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1900 AGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCCACATTGTCTTC 1959 | || ||||||||||||| || |||||| || || || || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1960 CCTGTTCTACTATCACCCTCAACAACTAT--ACTTTGAGGTCTCCAGGGCCGCGCAGCGG 2017 | ||| || || ||| | | | | | ||||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 2018 C------ACCAACGACGTTCTCAGCTGCCCATTCTTCTAGTTCTTCGGGAACATTA 2067 | |||| | || | |||||||||||| || ||||| || |||||| Sbjct 165527305 CTTGTAGACCA---AAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTA 165527253 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 237/355 (67%), Gaps = 9/355 (3%) Strand=Plus/Plus Query 1720 CCAGGATTGCAGAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTAC 1779 || || ||||| || | ||||||||| || |||||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1780 TTCGTGTTGCTCTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTGAGATAA 1839 || ||| |||||| | || || || || || ||||| |||| |||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1840 TGCGGGTCAACATCATCTATGACGTTATACCATGCTTCATTTGAATAGACCCTTGGGC-- 1897 || || | ||||| |||| ||| || | || ||||| |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1898 TAAGATCTATATGACCACATAGATAATTATGTGGGCCTAAGGACCTAGCCCACATTGTCT 1957 | || || ||||||||||||| || |||||| || || || || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1958 TCCCTGTTCTACTATCACCCTCAACAACTAT--ACTTTGAGGTCTCCAGGGCCGCGCAGC 2015 | ||||| || ||||| || | | ||| ||||| |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 2016 GGCACCAA---CGACGTTCTCAGCTGCCCATTCTTCTAGTTCTTCGGGAACATTA 2067 ||| | | | || | ||||||||| || || ||||| || |||||| Sbjct 89851499 GGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTA 89851553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8822252555640