Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008492.1 Length=2606 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-24 seq11 109 9e-21 >seq13 Length=197258317 Score = 122 bits (134), Expect = 1e-24 Identities = 249/366 (68%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1549 CCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAT 1608 ||||| ||||| || | ||||| ||| || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1609 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1668 ||||| || |||||||| | | || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1669 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCGG 1728 || || || |||| | |||||| |||| ||| || || || ||||| || || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1729 GC--ATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1786 | |||| |||| || |||| | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1787 TCGTCTTCCCTGTCCTCGAGTCACCCTCTACTATGA--GACTAACAGGTCTTTCCGGCCG 1844 | || || |||||||| || |||| |||| || | |||| ||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1845 CGCAGCGGAACCTCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGTCCGGCACGTT 1904 |||||||| | ||||| || || ||||| | ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1905 AGTGAA 1910 |||||| Sbjct 89851553 AGTGAA 89851558 >seq11 Length=168460249 Score = 109 bits (120), Expect = 9e-21 Identities = 304/459 (66%), Gaps = 17/459 (4%) Strand=Plus/Minus Query 1457 TGAGGGTGATGAAGACCGCATTCTTGAGAGTCCAGTTCCTGAGAGCTGAGTTTTCCTCTT 1516 ||||| |||||| || | |||||||||||||| | | | | | | | | || || Sbjct 165527694 TGAGGAAGATGAACACAACGTTCTTGAGAGTCCATTCCTTCAAACCCAACATGTCTGGTT 165527635 Query 1517 TGTCCAGGAAATCTTTATAGCTGGCA-CCCTCACCTGGATTGCAAAGCACGATTGATGGG 1575 ||| || | ||| ||| || | ||| | ||||| ||||| |||| ||||| ||| Sbjct 165527634 TGTTCAAGTGATCCCAATA--TGAAAACCCACTCCTGGGTTGCATAGCATGATTGTTGGT 165527577 Query 1576 ATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTC--T 1633 || |||||||| | || |||||||||||||||||| | |||||||| | ||| | Sbjct 165527576 ATGCCTCCTTTGAAAAGACTTGGCTTGCCGTATTTGCAGTAAGACTGCCAAT--TTCGTT 165527519 Query 1634 GGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAA 1693 | || || | || |||||||||||| | | || || || |||| | |||||| | Sbjct 165527518 GAGCTCCAATAAACTCTTTCCAGTGCATGA-----AG-TATTGTGGTGGTATGTCATCGA 165527465 Query 1694 TGACGTTATACTCCACTTCGTTCGAATAGCACCGGGCATTGAAATCCAGGTGTCCACTAA 1753 ||| ||| || || | | ||| || || ||| |||| || |||| | Sbjct 165527464 TGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGTGGTCCATATGACCACATA 165527405 Query 1754 GATAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCCT 1813 || |||||| || || | | |||||||| || || | |||||| || | ||| | Sbjct 165527404 TGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTGCTTGTCCTGGAATTACCTT 165527345 Query 1814 CTACTAT--GAGACTAACAGGTCTTTCCGGCCGCGCAGCGGAACCTCTCCCAAAATAATC 1871 || || |||| ||||| |||||||||||||| | ||||| || Sbjct 165527344 TTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGA 165527287 Query 1872 GTCCGCCCACTCTTGCATCTCGTCCGGCACGTTAGTGAA 1910 || ||||| ||||||| || || || || |||||||| Sbjct 165527286 ATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8230266379456