Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008494.1 Length=2569 Score E Sequences producing significant alignments: (Bits) Value seq13 190 3e-45 seq11 183 5e-43 seq16 168 1e-38 >seq13 Length=197258317 Score = 190 bits (210), Expect = 3e-45 Identities = 268/374 (72%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 1509 CCCGGATTGCAAAGCACGATTGAGGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTAT 1568 || || ||||| || | ||||| || || |||||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1569 TTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTTAACTTT 1628 ||||| || |||||||| || | ||| || || || | |||||||||||||| || | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT-- 89851318 Query 1629 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTCGAGTAGACCCTG 1688 |||| |||| | |||||| |||| ||| || || || || || ||| |||| | Sbjct 89851319 ----ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1689 T--TATTGAAGTCCAAATGTCCACTGAGATAATTATGTGGGCCTAAAGAACGAGCCCACA 1746 | | |||| ||||| ||| |||| | || |||||| || ||||| | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1747 TTGTTTTGCCTGTCCTTGATTCACCTTCCACTATTAT--ACTAATAGGTCTCTCCGGCCG 1804 ||||||| |||||||| || |||| ||| | ||||| ||| | |||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1805 CGCAGCGGAACTCCGACCAAAATAGTCATCTGCCCACTCTTGCATCTCGTCCGGCACGTT 1864 |||||||| | ||||| || ||||||||| | ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1865 AGTGAAAGATGATA 1878 |||||| ||||| Sbjct 89851553 AGTGAAGCTTGATA 89851566 Score = 111 bits (122), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1632 TATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTCGAGTAGACCCTGTTA 1691 ||||| |||| | |||||| |||| ||| || || | | || ||| |||| | || Sbjct 172133891 TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 172133950 Query 1692 TTGAAGTCCAAATGTCCACTGAGATAATTATGTGGGCCTAAAGAACGAGCCCACATTGTT 1751 |||| |||||| || |||| | || |||||| || | || | |||||||||||| Sbjct 172133951 TTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTT 172134009 Query 1752 TTGCCTGTCCTTGATTCACCTTCCACTATTA--TACTAATAGGTCTCTCCGGCCGCGCAG 1809 |||||||| || || | |||||| | |||| ||| | |||||| ||||||| |||| Sbjct 172134010 TTGCCTGTTCTGGAATTACCTTCTATGATTACTGACT--TTGGTCTCACCGGCCGTGCAG 172134067 Query 1810 CGGAACTCCGACCAAAATAGTCATCTGCCCACTCTTGCATCTCGTCCGGCACGTTAGTGA 1869 ||| |||||| || ||||||||| ||||||| || || | || ||||||| Sbjct 172134068 CGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGA 172134127 Query 1870 AAGATGATA 1878 | ||||| Sbjct 172134128 AGCTTGATA 172134136 >seq11 Length=168460249 Score = 183 bits (202), Expect = 5e-43 Identities = 269/379 (71%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 1502 ACCCTCACCCGGATTGCAAAGCACGATTGAGGGGATCCCTCCTTTAATTTGAACTGGCTT 1561 |||| | || || ||||| |||| ||||| || || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1562 TCCGTATTTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTATGAGTTCTTTCCAGTGCTT 1621 ||||||||||| | |||||||| || ||| || || || | |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1622 TAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTCGAGTA 1681 || | |||| |||| | |||||| |||| ||| || || | | || ||| | Sbjct 165527490 GAAGT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1682 GACCCTGTTATTGAAGTCCAAATGTCCACTGAGATAATTATGTGGGCCTAAAGAACGAGC 1741 ||| | || ||| ||||| ||| |||| | || |||||| || ||||| | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1742 CCACATTGTTTTGCCTGTCCTTGATTCACCTTCCACTATTAT--ACTAATAGGTCTCTCC 1799 |||||||||||||| |||||| || | ||||| | ||| | ||| | |||||| | Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATC 165527319 Query 1800 GGCCGCGCAGCGGAACTCCGACCAAAATAGTCATCTGCCCACTCTTGCATCTCGTCCGGC 1859 ||||||||||||| ||||||| || ||||||||| ||||||| || || || Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 1860 ACGTTAGTGAAAGATGATA 1878 || |||||||| ||||| Sbjct 165527258 ACATTAGTGAAGCTTGATA 165527240 >seq16 Length=188620566 Score = 168 bits (186), Expect = 1e-38 Identities = 242/337 (72%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 1543 CTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTA 1602 |||| || ||||| || |||| ||| ||||| |||| ||||||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1603 TGAGTTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1662 | ||| |||||||| ||||| | |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1663 ACTCCACTTCATTCGAGTAGACCCTGTTATTGAAGTCCAAATGTCCACTGAGATAATTAT 1722 | ||||| || || ||| | ||| | ||| ||||| |||| ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1723 GTGGGCCTAAAGAACGAGCCCACATTGTTTTGCCTGTCCTTGATTCACCTTCCACTATTA 1782 || || || || | ||||||||||| || || || ||||| |||||||| | ||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1783 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTCCGA-CCAAAATAGTCATCTGCCC 1839 | ||| ||||||| || || | ||| | || || |||||| |||||||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 1840 ACTCTTGCATCTCGTCCGGCACGTTAGTGAAAGATGA 1876 | | |||||| | | || ||||| |||||||| || Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8111868301680