Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008517.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq16 131 3e-27 seq13 102 1e-18 seq11 87.8 3e-14 >seq16 Length=188620566 Score = 131 bits (144), Expect = 3e-27 Identities = 189/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1734 CTTTTATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCA 1793 |||| || ||||| || || | |||||| |||| ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1794 TAAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTATACCAAA 1853 ||||| || |||| |||| | || || | ||||| |||||| |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1854 CATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTGTGTGGTC 1913 |||| ||| | | ||| | || | | ||||| || ||||| |||||||| ||| || Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1914 CAAGTGACCTCGCCCACATCGTCTTCCCCGTCCTACTCTCACCCTCAATCACTAT--ACT 1971 | | ||| || |||||||| ||||| || || || ||||| ||||| | ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1972 TACGGGCCTTAATGGCCGCGCAGCG 1996 | || || ||||| || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 209/305 (69%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1699 TCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCGTA 1758 |||||| |||||||| | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1759 CTTTGTATTT-GATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGT 1817 |||| | || || ||||| | | ||| || || ||||| ||||| ||||||| | || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1818 AGTGGGGATCAACGTCATCAATGACGTTATACCAAACATCATTATTGTAGACCTTTGGGC 1877 | || || | |||||| |||| ||| || ||| || || | |||| ||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1878 --TAAGGTCTAGATGACCACACAAATAATTGTGTGGTCCAAGTGACCTCGCCCACATCGT 1935 | ||||| | ||||||||| | || || ||| ||| | || || |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1936 CTTCCCCGTCCTACTCTCACCCTCAATCACTAT--ACTTACGGGCCTTAATGGCCGCGCA 1993 || || ||||| |||| || || | ||| |||| || || | ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1994 GCGGC 1998 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 204/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 1699 TCCTGGATTGCATAGGAAGATAGTGGGAATTCCGCCTTTTATTTGAACTGGCTTCCCGTA 1758 |||||| |||||||| | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1759 CTTTGTATTT-GATTGCCAGTCTCTTTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGT 1817 |||| | | || ||||| | || ||| || || ||||| ||||| ||||| | | || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1818 AGTGGGGATCAACGTCATCAATGACGTTATACCAAACATCATTATTGTAGACCTTTGGGC 1877 | || || | |||||| |||| ||| || | | | || | |||| ||| | Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1878 TAAGGTCTAGATGACCACACAAATAATTGTGTGGTCCAAGTGACCTCGCCCACATCGTCT 1937 | |||| | ||||||||| | || || ||| ||| | || || |||||||| || | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1938 TCCCCGTCCTACTCTCACCCTCAATCACTAT--ACTTACGGGCCTTAATGGCCGCGCAGC 1995 | | ||||| | ||| | || | | | |||| || || | ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308 Query 1996 GGC 1998 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710258586656