Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008779.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq13 172 9e-40 seq16 165 1e-37 seq11 159 6e-36 >seq13 Length=197258317 Score = 172 bits (190), Expect = 9e-40 Identities = 255/357 (71%), Gaps = 12/357 (3%) Strand=Plus/Plus Query 1552 CCTGGATTGCAAAGCACGATTGCTGGGATACCTCCTTTTATTTGAACTGGCTTGCCGTAC 1611 ||||| ||||| || | ||||| ||| || |||||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1612 TTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1671 ||||| || |||||||| | || || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1672 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATTTGAGTATAC--CC 1729 || || || |||| | |||||| |||| ||| || || ||||| |||||| | || Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1730 GGTGATTGAAGTCCAGATGTCCACTGAGGTAATTATGTGGGCCTAACGCACGAGCCCACA 1789 | |||| ||||| ||| |||| | ||| |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1790 TCGTCTTCCCTGTCCTTGAATCACCTTCAACTATGA--GACTTACTGGTCTCTCAGGCCG 1847 | || || |||||||| ||||||| ||| | || | ||||| ||||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1848 CGCAGCGGCACCTCTCCCAAAATAATCATCTGCCCACTCTTGCATCTCTTCTGGAAC 1904 ||||||||| | ||||| || ||||||||| | ||||| |||||||| || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTAC 89851549 >seq16 Length=188620566 Score = 165 bits (182), Expect = 1e-37 Identities = 243/340 (71%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1586 CTTTTATTTGAACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCA 1645 |||| || ||||| || || | ||||||||| |||| ||||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1646 GCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1705 | ||||| |||||||| |||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1706 ACTCCACGTCATTTGAGTATACCCGGTGATTGAAGTCCAGATGTCCACTGAGGTAATTAT 1765 | ||||| || || ||| | ||| |||| ||||| | || ||||| | ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1766 GTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCAACTATGA 1825 || || || | | |||||||| ||||| || || |||||||||||||||| ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1826 --GACTTACTGGTCTCTCAGGCCGCGCAGCGGCACCTCTC----CCAAAATAATCATCTG 1879 |||| | |||||| || || | |||| || || |||||||||||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1880 CCCACTCTTGCATCTCTTCTGGAACGGATGTGAATGAGGA 1919 |||| | |||||| ||| ||| ||| ||||| || || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 159 bits (176), Expect = 6e-36 Identities = 256/365 (70%), Gaps = 16/365 (4%) Strand=Plus/Minus Query 1545 ACCCTCACCTGGATTGCAAAGCACGATTGCTGGGATACCTCCTTTTATTTGAACTGGCTT 1604 |||| | ||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1605 GCCGTACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGCAATTCTTTCCAGTGCTT 1664 |||||| ||||| | |||||||| | | || || || | || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1665 TAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACGTCATTTGAGTA 1724 | || || || |||| | |||||| |||| ||| || || ||| |||||| | Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1725 TACCCGGTGATTGAAGTCCAGATGTCCACTGAGGTAATTATGTGGGCCTAACGCACGAGC 1784 || | ||| ||||| ||| |||| | ||| |||||| || || | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1785 CCACATCGTCTTCCCTGTCCTTGAATCACCTTCAACTATGA-----GACTTACTGGTCTC 1839 |||||| || || | |||||| |||| ||||| ||||| ||||| ||||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTT--TGGTCTC 165527322 Query 1840 TCAGGCCGCGCAGCGGCACCTCTCCCAAAATAATCATCTGCCCACTCTTGCATCTCTTCT 1899 |||||||||||||| | ||||| || ||||||||| ||||||| |||||| Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 1900 GGAAC 1904 || || Sbjct 165527261 GGTAC 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246266119696