Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_008794.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq11 89.7 9e-15 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 191/269 (71%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1718 CTTTAATTTGAACTGGCTTTCCGTATTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1775 |||| || ||||| || |||| ||| || | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1776 CATGAATTCTTTAAAGTGTTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTGAA--C 1833 | ||||| || ||||||||| | || || | |||| |||||| ||||| | | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1834 CAGGCATCATTGCTGTACACTTTAGGGCTCAGATCTAGATGTCCACACAAATAATTGTGT 1893 || |||| || | | || |||| ||| |||| || |||| |||||||| ||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1894 GGTCCTAATGACCTGGCCCACATGGTCTTCCCCGTCCTGCTATCACCCTCTATGACTAT- 1952 ||| ||||| || |||||||| ||||| || || || |||||| || || | ||| Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1953 -ACTTACCGGTCTCAATGGCCGCGCAGCG 1980 ||| | ||||||||||| || | |||| Sbjct 2249097 GACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 204/304 (67%), Gaps = 10/304 (3%) Strand=Plus/Minus Query 1683 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1742 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1743 TTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGTA 1802 ||| || ||||| | | ||| || || || || ||||| |||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1803 GTGCGGATCTACGTCATCAATGACGTTGAACCAGGCATCATTGCT---GTACACTTTAGG 1859 || || || |||||| |||| |||| | | || | ||| | | | ||||| Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTTT 165527428 Query 1860 GCTCAGATCTAGATGTCCACACAAATAATTGTGTGGTCCTAATGACCTGGCCCACATGGT 1919 | | | || | ||| ||||| | || || ||| ||| || || || |||||||| || Sbjct 165527427 GTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGT 165527368 Query 1920 CTTCCCCGTCCTGCTATCACCCTCTATGACTAT--ACTTACCGGTCTCAATGGCCGCGCA 1977 || | |||||| || ||| | ||||| | | |||| ||||||| ||||||||| Sbjct 165527367 TTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCA 165527310 Query 1978 GCGG 1981 |||| Sbjct 165527309 GCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675059158128