Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009030.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-26 seq11 91.5 3e-15 >seq16 Length=188620566 Score = 129 bits (142), Expect = 1e-26 Identities = 191/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1727 CTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCGCCCA 1786 |||| || |||| ||||| | |||||| || ||||||||| |||||||| || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1787 TGAATTCTTTAAAGTGCTTTAGATAATGAGGATCGACGTCATCAATGACGTTGTA--CCA 1844 ||||| || |||| |||| | | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1845 AGCATTATTACTGTACACCTTTGGACTGAGGTCAAGATGACCACACAAATAATTGTGTGG 1904 ||| ||| | | ||| | ||| | | ||| | || ||||| |||||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1905 TCCTAATGACCTAGCCCACATTGTCTTGCCGGTACGACTATCCCCTTCAATCACAAT--A 1962 ||| ||||| || |||||||||||||| ||||| | ||| |||||||| | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1963 CTCATGGGTCTCAATGGCCGCGCAGCG 1989 || | ||||||||||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 200/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1692 TCCTGGATTGCAGAGGAAGATTGCCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA 1751 |||||| ||||| || | ||||| || || |||||||| | || |||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1752 CTTTGTGTTGCTTTGCCAGTCCCTTTGTGCGCCCATGAATTCTTTAAAGTGCTTTAGATA 1811 || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1812 ATGAGGATCGACGTCATCAATGACGTTGTACCAAGCATTATTACTGTACACCTTTGGACT 1871 || || | |||||| |||| |||||| ||| || || | | || ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1872 GAGGTCAAGATGACCACACAAATAATTGTGTGGTCCTAATGACCTAGCCCACATTGTCTT 1931 | |||| | ||||||||| | || || ||| ||| || || || ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1932 GCCGGTACGACTATCCCCTTCAATCACAATACTCATGGGTCTCAATGGCCGCGCAGCGGC 1991 || || | || |||| || | | | | ||||||| |||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8729458274944