Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009031.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 2e-16 seq16 93.3 7e-16 seq11 89.7 9e-15 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 205/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1696 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTA 1755 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1756 CTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTCAGGTA 1815 ||| ||| ||||| | || || || || ||||| || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1816 GTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACTTTTGGAC- 1874 || || | |||||| |||| ||| || | || || ||| | |||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1875 -TCAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGACCTGGCCCACATTGTC 1933 | ||||||| ||| || |||| ||| || || ||| || || || ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1934 TTGCCTGTACGACTATCACCCTCTATCACAAT--ACTAATCGGTCTCCAAGGCCGCGCAG 1991 || ||||| | ||||| ||||| | || ||| | |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 1992 CGGC 1995 |||| Sbjct 89851498 CGGC 89851501 >seq16 Length=188620566 Score = 93.3 bits (102), Expect = 7e-16 Identities = 183/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1731 CTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCA 1790 |||| || |||| || || | ||||||| || ||||||||| || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1791 TGAACTCCTTAAAGTGCTTCAGGTAGTGCGGATCAACGTCATCAATGACGTTATA--CCA 1848 || ||||| |||| || | | || || | ||||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1849 TGCATCATTGGAGTACACTTTTGGACTCAGGTCCAGATGCCCGCATAGGTAATTGTGGGG 1908 |||| || ||| | || | ||| ||| ||| | || || | || ||||| || Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1909 TCCTAATGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACCCTCTATCACAAT--A 1966 ||| ||||| || |||||||||||||| || || | |||||| || || | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1967 CTAATCGGTCTCCAAGGCCGCGCAGCG 1993 || | |||||| | || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 202/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1696 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTA 1755 |||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1756 CTTGGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAACTCCTTAAAGTGCTTCAGGTA 1815 ||| || ||||| | | || || || || ||||| || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1816 GTGCGGATCAACGTCATCAATGACGTTATACCATGCATCATTGGAGTACACTTTTGGACT 1875 || || | |||||| |||| ||| || || | || ||| | |||||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1876 CAGGTCCAGATGCCCGCATAGGTAATTGTGGGGTCCTAATGACCTGGCCCACATTGTCTT 1935 |||||| ||| || |||| ||| || || ||| || || || ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1936 GCCTGTACGACTATCACCCTCTATCACAAT--ACTAATCGGTCTCCAAGGCCGCGCAGCG 1993 || ||| | || ||| | ||| | | ||| | |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCG 165527307 Query 1994 GC 1995 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665459313984