Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_009088.1
Length=2728
Score E
Sequences producing significant alignments: (Bits) Value
seq13 111 3e-21
seq16 109 9e-21
seq11 107 3e-20
>seq13
Length=197258317
Score = 111 bits (122), Expect = 3e-21
Identities = 208/303 (69%), Gaps = 6/303 (2%)
Strand=Plus/Plus
Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717
|| || ||||| || | |||||||||||| || ||||| | || |||||| ||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1777
||| || || ||||| | ||| || || || |||||||| ||||||||| | |
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320
Query 1778 TGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACCTTT--GGAC 1835
|| || || |||||| |||| ||| || ||||||| | | || |||
Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380
Query 1836 TAAGATCTAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTCT 1895
| || || | || ||||| | ||||||||| || ||||| || ||||||||||| |
Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440
Query 1896 TCCCAGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGC 1953
| || || | ||| | || || | ||| ||||| ||||||| |||||||||||
Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498
Query 1954 GGC 1956
|||
Sbjct 89851499 GGC 89851501
>seq16
Length=188620566
Score = 109 bits (120), Expect = 9e-21
Identities = 188/271 (69%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 1692 CTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCA 1751
|||| || ||||| || || | ||||||| || | ||||||||| ||||| || || |
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1752 TGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATA--CCA 1809
|| || || |||| || | | || || | |||| |||||| |||||||| |||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214
Query 1810 TGCGTCGTTACTGTACACCTTTGGACTAAGATCTAAGTGCCCACACAGATAGTTATGTGG 1869
| |||||| | | ||| | ||| | | ||||| | |||| | ||| ||||||
Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156
Query 1870 GCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCTCCCTCAATTACTATACT 1929
|| || || || |||||||||||||| || || | ||| || ||||||| |||
Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096
Query 1930 TTGAGGTCTCAGGGGCCGCGCAGCGGCGTCG 1960
|||||||||| || || | |||| ||||
Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCGCTGTCG 2249065
>seq11
Length=168460249
Score = 107 bits (118), Expect = 3e-20
Identities = 241/358 (67%), Gaps = 7/358 (2%)
Strand=Plus/Minus
Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717
|| || ||||| || | |||||||||||| || ||||| | || |||||| |||||
Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544
Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1777
||| | || ||||| | | ||| || || || |||||||| ||||| ||| | |
Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484
Query 1778 TGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACCTTTGGACTA 1837
|| || || |||||| |||| ||| || |||| ||| | | || ||| |
Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424
Query 1838 AGATCTAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTC 1897
| || | || ||||| | ||||||||| || ||||| || ||||||||||| ||
Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364
Query 1898 CCAGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGCGG 1955
| || | || || | || | | | ||||| ||||||| |||||||||||||
Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306
Query 1956 C--GTCGACAACATTTTCCGAC-GCCCACTCTTCAAGTTCTTCTGGAACTTGATTGAA 2010
| || ||| | | | | | ||||| |||| || |||||||| || | | ||||
Sbjct 165527305 CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAGTGAA 165527248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8620660041312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |