Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009088.1 Length=2728 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-21 seq16 109 9e-21 seq11 107 3e-20 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717 || || ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1777 ||| || || ||||| | ||| || || || |||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1778 TGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACCTTT--GGAC 1835 || || || |||||| |||| ||| || ||||||| | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1836 TAAGATCTAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTCT 1895 | || || | || ||||| | ||||||||| || ||||| || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1896 TCCCAGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGC 1953 | || || | ||| | || || | ||| ||||| ||||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1954 GGC 1956 ||| Sbjct 89851499 GGC 89851501 >seq16 Length=188620566 Score = 109 bits (120), Expect = 9e-21 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 1692 CTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCA 1751 |||| || ||||| || || | ||||||| || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1752 TGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATA--CCA 1809 || || || |||| || | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1810 TGCGTCGTTACTGTACACCTTTGGACTAAGATCTAAGTGCCCACACAGATAGTTATGTGG 1869 | |||||| | | ||| | ||| | | ||||| | |||| | ||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1870 GCCTAAAGACCTAGCCCACATTGTCTTCCCAGTACGACTATCTCCCTCAATTACTATACT 1929 || || || || |||||||||||||| || || | ||| || ||||||| ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1930 TTGAGGTCTCAGGGGCCGCGCAGCGGCGTCG 1960 |||||||||| || || | |||| |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCGCTGTCG 2249065 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 241/358 (67%), Gaps = 7/358 (2%) Strand=Plus/Minus Query 1658 CCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1717 || || ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1718 TTGGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1777 ||| | || ||||| | | ||| || || || |||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1778 TGCGGATCTACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACCTTTGGACTA 1837 || || || |||||| |||| ||| || |||| ||| | | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1838 AGATCTAAGTGCCCACACAGATAGTTATGTGGGCCTAAAGACCTAGCCCACATTGTCTTC 1897 | || | || ||||| | ||||||||| || ||||| || ||||||||||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1898 CCAGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGCGG 1955 | || | || || | || | | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1956 C--GTCGACAACATTTTCCGAC-GCCCACTCTTCAAGTTCTTCTGGAACTTGATTGAA 2010 | || ||| | | | | | ||||| |||| || |||||||| || | | |||| Sbjct 165527305 CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8620660041312