Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009354.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq11 109 1e-20 seq16 107 3e-20 seq13 100 5e-18 >seq11 Length=168460249 Score = 109 bits (120), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 1684 CCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCGTAC 1743 ||||| ||||| || | ||||||||| || || ||||| | || |||||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1744 TTG--GTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGAT 1801 ||| ||| || |||| | || || || || ||||||||||| |||| ||| | Sbjct 165527543 TTGCAGTAAGACT--GCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1802 AATGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTTACTGTATACCTTTGGGC 1861 | || || | |||||| |||| |||||| ||||| ||| | | || ||| | Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1862 TGAGGTCCAGATGCCCACAGAGATAATTATGTGGACCCAATGACCTGGCCCACATCGTCT 1921 || |||||| ||| ||||| | || |||||| ||||| || || |||||||| || | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1922 T 1922 | Sbjct 165527365 T 165527365 >seq16 Length=188620566 Score = 107 bits (118), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 1718 CTTTAATTTGAACTGGCTTGCCGTACTTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCA 1777 |||| || ||||| || || | ||||||| || |||||||||||| || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1778 TAAACTCTTTAAAGTGTTTGAGATAATGGGGATCAACGTCATCAATGACGTTGTA--CCA 1835 || || || ||||||| | | | || || | ||||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1836 AGCGTCGTTACTGTATACCTTTGGGCTGAGGTCCAGATGCCCACAGAGATAATTATGTGG 1895 | |||||| | | ||| | || | | ||| | || |||| | |||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1896 ACCCAATGACCTGGCCCACATCGTCTTCCCCGTTCGACTGTCACCTTCAA 1945 |||||||| || |||||||| ||||| || |||| |||||||||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAA 2249106 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 1684 CCTGGATTGCAAAGGAAGATTGTTGGAATCCCGCCTTTAATTTGAACTGGCTTGCCGTAC 1743 ||||| ||||| || | ||||||||| || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1744 TTGGTATTGCTTTGCCAGTCTCTCTGGGCCCCCATAAACTCTTTAAAGTGTTTGAGATAA 1803 ||| || ||||| | | || || || ||||||||||| |||| |||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1804 TGGGGATCAACGTCATCAATGACGTTGTACCAAGCGTCGTTACTGTATACCTTT--GGGC 1861 || || | |||||| |||| |||||| | ||||||| | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1862 TGAGGTCCAGATGCCCACAGAGATAATTATGTGGACCCAATGACCTGGCCCACATCGTCT 1921 ||||||||| ||| ||||| | || |||||| ||||| || || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1922 TCCCCGT 1928 | || || Sbjct 89851441 TACCTGT 89851447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700658742512