Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009451.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq13 104 4e-19 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1706 CTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTTGATTGCCAATCCCTCTGGGCCCCCA 1765 |||| || ||||| || |||| ||| || |||| |||||| || || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1766 TGAATTCTTTAAAGTGTTTCAAATAATGCGGATCTACGTCATCAATGACGTTATA--CCA 1823 ||||| || ||||||| ||| | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1824 AGCATCGTTTGAATAAATTTTAGGGCTTAAATCCAAATGCCCACATAAATAATTATGTGG 1883 ||||||| || ||| |||| | || || |||| |||| ||||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1884 GCCTAATGATCTGGCCCATAAAGTCTTCCCTGT 1916 || |||||||| ||||| | ||||| || || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 205/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1672 CCTGGATTGCAGAGGAAGATTGTTGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1731 ||||| ||||| || | ||||||||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1732 TTCGTGTTTGATTGCCAATCCCTCTGGGCCCCCATGAATTCTTTAAAGTGTTTCAAATAA 1791 || ||| || ||||||| || || || || || ||||| |||| || || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1792 TGCGGATCTACGTCATCAATGACGTTATACCAAGCATCGTTTGAATAAA-TTTTAGGGCT 1850 || || || |||||| |||| ||| || | | |||||||| | | |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1851 TAAA-TCCAAATGCCCACATAAATAATTATGTGGGCCTAATGATCTGGCCCATAAAGTCT 1909 | | |||| ||| ||||||| || |||||| || || ||||| ||||| | || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1910 TCCCTGTCCGACTATCGCCCTCGACGACAATACTATTAGGTCTATATGGCCGCGCAGCGG 1969 | ||||||| ||| | || | || || || ||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1970 C 1970 | Sbjct 89851501 C 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8723058378848