Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009490.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-26 seq13 120 5e-24 seq11 107 3e-20 >seq16 Length=188620566 Score = 129 bits (142), Expect = 1e-26 Identities = 193/271 (71%), Gaps = 10/271 (4%) Strand=Plus/Minus Query 1584 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAATCCTTTTGGGCCCCAA 1643 |||| || |||||||| |||| || || || || | ||||| || |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1644 TCAATTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGTGCGACATCATCAATGACGTTAT 1703 ||||| |||||||| |||| | | ||| | | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1704 ACTCCACATGATTGGAGTAAACCCTAGAATTGAAATCTAAATGACCGCTCAAGTAGTTAT 1763 | ||||||| || ||| ||||| ||| ||| || ||||||| ||| || || || |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1764 GTGGGCCTAAAGCACGAGCCCACATTGTCTTGCCCGTTCGTGATTCCCCTTCGACGATAA 1823 || || || | | |||||||||||||| || |||| ||| || ||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1824 T--ACTAATAGGTCTCTCTGGCCGCGCAGCG 1852 | ||| ||||||| ||| || | |||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 120 bits (132), Expect = 5e-24 Identities = 214/310 (69%), Gaps = 12/310 (4%) Strand=Plus/Plus Query 1548 CTCCTGGATTGCACAGCACGATTGATGGGATACCACCTTTAATTTGAACCGGCTTTCCAT 1607 ||||||| ||||| || | ||||| ||| || || ||||| | || ||||| | | Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1608 ATTTACAGTTGGACTGCCAATCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCT 1667 |||| ||||| |||||||||| | ||| || ||||| || |||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1668 TTAGGTAGTGCGGTGCGACATCATCAATGACGTTATACTCCACATGATTGGAGTAAAC-- 1725 | | ||| || |||| | ||||| |||| ||| || || || | || ||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1726 CCTAGAATTGAAATCTAAATGACCGCTCAAGTAGTTATGTGGGCCTAAAGCACGAGCCCA 1785 | |||| || | |||||| | | |||||||||| || |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1786 CATTGTCTTGCCCGTTCGTGATTCCCCTTCGACGATAAT--ACTAATAGGTCTCTCTGGC 1843 |||||| || || || | || || | ||| | ||| || ||| | |||||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1844 CGCGCAGCGG 1853 |||||||||| Sbjct 89851491 CGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 212/312 (68%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 1544 CCCTCTCCTGGATTGCACAGCACGATTGATGGGATACCACCTTTAATTTGAACCGGCTTT 1603 ||| ||||||| ||||| |||| ||||| ||| || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1604 CCATATTTACAGTTGGACTGCCAATCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTTT 1663 || ||||| |||| |||||||||| ||| || ||||| || |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1664 AGCTTTAGGTAGTGCGGTGCGACATCATCAATGACGTTATACTCCACATGATTGGAGTAA 1723 || | | ||| || |||| | ||||| |||| ||| || || | | || ||| | Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1724 ACCCTAGAATTGAAATCTAAATGACCGCTCAAGTAGTTATGTGGGCCTAAAGCACGAGCC 1783 || | ||| || | |||||| | | |||||||||| || |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1784 CACATTGTCTTGCCCGTTCGTGATTCCCCTTCGACGATAAT--ACTAATAGGTCTCTCTG 1841 |||||||| |||| || | || | |||| | ||| | ||| | |||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1842 GCCGCGCAGCGG 1853 |||||||||||| Sbjct 165527317 GCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8239866223600