Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009545.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq16 141 2e-30 seq13 91.5 3e-15 >seq16 Length=188620566 Score = 141 bits (156), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 1748 CTTTAATTTGAACCGGCTTTCCGTACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCA 1807 |||| || |||||||| |||| |||||| | || |||||||| | |||| | || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1808 TGAATTCTTTATAGTGCTTTAGATAGTGCGGGTCGACGTCATCTATTACGTTATA--CCA 1865 ||||| || |||| |||| | | || |||| |||| ||| || |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1866 TGCGTCGTTAGAGAACACATTAGGGTTTAAGTCTAAATGTCCACATAAGTAATTATGTGG 1925 | ||||||||||| || |||| || |||||||||| |||| ||| ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1926 CCCTAATGACCTGGCCCACAACGTTTTCCCGGTTCGACTTTCACCTTCAAT 1976 || ||||| || ||||||| || || ||||||| ||||||||||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq13 Length=197258317 Score = 91.5 bits (100), Expect = 3e-15 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 1714 CCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTAC 1773 ||||| ||||| || | ||| || ||||| || ||||| | || ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1774 TTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCTTTAGATAG 1833 || | ||| ||||| ||| ||| | || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1834 TGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACATTAGGGTTT 1893 || || | |||||| || | ||| || ||||||| ||||| || || | | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1894 --AAGTCTAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCCACAACGTTT 1951 | ||| | ||| ||||||| ||| |||||| || || || || ||||||| |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1952 TCCCGGTTCGACTTTCACCTTCAATGACAAT-GCCTTTGGGCCTTAGAGGCCGCGCAGCG 2010 | || || | |||| ||| |||| || | |||||| | | | |||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTC-TCATCGGCCGCGCAGCG 89851499 Query 2011 G 2011 | Sbjct 89851500 G 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726258326896