Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009546.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq16 111 3e-21 >seq16 Length=188620566 Score = 111 bits (122), Expect = 3e-21 Identities = 188/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1726 CTTTAATTTGAATTGGTTTCCCGTACTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1783 |||| || |||| ||||| | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1784 CATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCTACGTCATCTATGACGTTGTA--C 1841 | ||||| || |||| |||| | || |||| |||| ||| || ||||| || | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1842 CATGCATCATTGCTGTACACCTTTGGGCTTAAACCAAGGTGCCCACATAAATAATTATGT 1901 || |||| || | | ||| | || | || | | | |||| ||||||||||||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1902 GGACCCAATGACCTGGCCCACATTGTCTTGCCGGTACGACTATCACCCTCTATTACAATA 1961 |||||||| || |||||||||||||| ||||| | |||||| || |||| || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1962 CTTTGAGGTCTCCACGGCCGCGCAGCG 1988 ||||||||| | || || | |||| Sbjct 2249097 GACTGAGGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713458534704