Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009547.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 2e-16 seq11 82.4 1e-12 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 211/308 (69%), Gaps = 14/308 (5%) Strand=Plus/Plus Query 1686 TCCTGGATTGCAAAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA 1745 |||||| ||||| || | |||||| || || |||||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1746 CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAATGTTTCAGGTA 1805 || ||| ||||| | ||| || || || || || || | || || | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1806 --GTGGGGGTCGACGTCATCGATTACGTTGTA--CCACGCATCATTGCTGTAGACCTTTG 1861 |||| ||| | ||||||||| | |||||| | ||| || || | |||| ||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTT 89851375 Query 1862 GG-CTT-AGGTCCAGATGTCCACACAGATAGTTGTGTGGGCCTAGAGATCGTGCCCACAT 1919 ||| ||||||| ||| ||||| | ||||| ||| || | ||||| ||||||||| Sbjct 89851376 CTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACAT 89851435 Query 1920 CGTCTTCCCGGTTCTACTCTCACCCTCTATGACTATACTGA--TCGGTCGCCAAGGCCGC 1977 || || || || || |||| ||||||| ||| ||| | |||| | |||||| Sbjct 89851436 TGTTTTACCTGTCCTGGAATCACTTTCTATGATTAT--TGACTTTGGTCTCATCGGCCGC 89851493 Query 1978 GCAGCGGC 1985 |||||||| Sbjct 89851494 GCAGCGGC 89851501 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 203/304 (67%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1686 TCCTGGATTGCAAAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTA 1745 |||||| ||||| || | |||||| || || |||||||| | || |||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1746 CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTGAAATGTTTCAGGTA 1805 || || ||||| | | ||| || || || || || || | || | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1806 --GTGGGGGTCGACGTCATCGATTACGTTGTACCACGCATCATTGCTGTAGACCTTTGGG 1863 |||| ||| | ||||||||| | |||||| || | || | |||| ||| | Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1864 CTTAGGTCCAGATGTCCACACAGATAGTTGTGTGGGCCTAGAGATCGTGCCCACATCGTC 1923 | |||||| ||| ||||| | ||||| ||| || | ||||| ||||||||| || Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1924 TTCCCGGTTCTACTCTCACCCTCTATGACTATACTGA--TCGGTCGCCAAGGCCGCGCAG 1981 || | || || | ||| | ||||| | | ||| | |||| | |||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCGGCCGCGCAG 165527309 Query 1982 CGGC 1985 |||| Sbjct 165527308 CGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700658742512