Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009548.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq16 87.8 3e-14 seq13 86.0 1e-13 seq11 77.0 6e-11 >seq16 Length=188620566 Score = 87.8 bits (96), Expect = 3e-14 Identities = 166/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 1718 CTTTAATTTGAATTGGTTTCCCGTACTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1775 |||| || |||| ||||| | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1776 CATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTATA--C 1833 | ||||| || |||| |||| | || || | |||| |||||| |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1834 CAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGGTGTCCGCATAAATAATTATGT 1893 || |||| ||| | | || | || | | || | | || | ||||||||||||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1894 GGGCCTAATGACCTAGCCCACATTGTTTTCCCCGTCCGACTATCCCCTTCGATAACTAT 1952 || ||||| || ||||||||||| || || || | ||| ||||| || | ||| Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTAT 2249099 >seq13 Length=197258317 Score = 86.0 bits (94), Expect = 1e-13 Identities = 203/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1684 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1743 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1744 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAG 1803 || ||| ||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1804 TGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGG-CT 1862 || || || |||||| |||| ||| || | | || || | | |||||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1863 T-AGATCAAGGTGTCCGCATAAATAATTATGTGGGCCTAATGACCTAGCCCACATTGTTT 1921 | || || | || || |||| || |||||| || || || || ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1922 TCCCCGTCCGACTATCCCCTTCGATAACTAT--ACTTATCGGTCGTAAAGGCCGCGCAGC 1979 | || |||| ||| | ||| || | ||| ||| | |||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGC 89851498 Query 1980 GG 1981 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 77.0 bits (84), Expect = 6e-11 Identities = 165/247 (67%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 1684 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1743 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1744 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAG 1803 || || ||||| | | ||| || || || || ||||| ||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1804 TGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTT 1863 || || || |||||| |||| ||| || ||| | || | | |||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1864 AGATCAAGGTGTCCGCATAAATAATTATGTGGGCCTAATGACCTAGCCCACATTGTTTTC 1923 | || | || || |||| || |||||| || || || || |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1924 CCCGTCC 1930 | |||| Sbjct 165527363 CTTGTCC 165527357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675059158128