Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009549.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq13 100 5e-18 seq11 95.1 2e-16 seq16 93.3 7e-16 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 210/307 (68%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 1677 TCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATTTGAACTGGCTTCCCGTA 1736 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1737 TTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATA 1796 |||| ||| ||||| | | ||| || || || |||||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1797 GTGGGGATCGACGTCATCAATGACGTTATACCAGGCACTGTTGTT---GTACACTTTTGG 1853 || || | |||||| |||| ||| || || || ||| | | |||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAAT---CAACGTCGTTTGAGAAGACTTTTTC 89851376 Query 1854 A-CTTAAA-TCTAAATGTCCGCATAAGTAGTTATGTGGTCCCAAAGACCTGGCCCATATC 1911 ||| | || | ||| || |||| |||||||||| ||||||||| || ||||| || Sbjct 89851377 TTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATT 89851436 Query 1912 GTCTTCCCTGTCCTACTATCGCCCTCTACCACAAT--ACTTATCGGTCTTAATGGCCGCG 1969 || || |||||||| ||| | |||| | || |||| ||||| | ||||||| Sbjct 89851437 GTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCG 89851494 Query 1970 CAGCGGC 1976 ||||||| Sbjct 89851495 CAGCGGC 89851501 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 206/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 1677 TCCTGGATTGCAGAGGAAGATAGTGGGAATACCCCCTTTAATTTGAACTGGCTTCCCGTA 1736 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1737 TTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATA 1796 |||| || ||||| | || ||| || || || |||||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1797 GTGGGGATCGACGTCATCAATGACGTTATACCAGGCACTGTTGTT---GTACACTTTTGG 1853 || || | |||||| |||| ||| || | || |||||| | | |||||| Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTTT 165527428 Query 1854 ACTTAAATCTAAATGTCCGCATAAGTAGTTATGTGGTCCCAAAGACCTGGCCCATATCGT 1913 | || | ||| || |||| |||||||||| ||||||||| || ||||| || || Sbjct 165527427 GTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGT 165527368 Query 1914 CTTCCCTGTCCTACTATCGCCCTCTACCACAAT--ACTTATCGGTCTTAATGGCCGCGCA 1971 || | |||||| || || | || | | |||| ||||| | ||||||||| Sbjct 165527367 TTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCA 165527310 Query 1972 GCGGC 1976 ||||| Sbjct 165527309 GCGGC 165527305 >seq16 Length=188620566 Score = 93.3 bits (102), Expect = 7e-16 Identities = 183/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1712 CTTTAATTTGAACTGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1771 |||| || ||||| || || | ||| ||| || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1772 TGAACTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTATA--CCA 1829 || || || |||| |||| | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1830 GGCACTGTTGTTGTACACTTTTGGACTTAAATCTAAATGTCCGCATAAGTAGTTATGTGG 1889 || ||| | | || | ||| | || ||||||| || | ||| || |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1890 TCCCAAAGACCTGGCCCATATCGTCTTCCCTGTCCTACTATCGCCCTCTACCACAAT--A 1947 |||||| || || ||||| || ||||| || || || ||| || || | | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1948 CTTATCGGTCTTAATGGCCGCGCAGCG 1974 || | ||||| ||||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694258846416