Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009550.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq16 105 1e-19 >seq16 Length=188620566 Score = 105 bits (116), Expect = 1e-19 Identities = 186/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1708 CTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1767 |||| || |||| || || | |||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1768 TGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAACCACGTTGTA--CCA 1825 ||||| || |||| |||| | | || |||| |||| ||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1826 TGCCTCGTTGCTGTACACCTTGGGGCTCAAGTCAAGGTGCCCACACAAATAATTATGTGG 1885 | ||||| | | ||| | || ||||||| | | |||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1886 ACCCAAAGACCTAGCCCACATGGTCTTGCCGGTCCTACTATCACCCTCAATAACAAT--A 1943 ||||| || || |||||||| ||||| ||||| || |||||| ||||| | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1944 CTAACCGGTCTCCAAGGCCGCGCAGCG 1970 || | |||||| | || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659059417888