Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009553.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq16 149 1e-32 seq13 104 4e-19 seq11 95.1 2e-16 >seq16 Length=188620566 Score = 149 bits (164), Expect = 1e-32 Identities = 199/269 (74%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1724 CTTTAATTTGAACTGGCTTTCCGTATTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1781 |||| || ||||| || |||| ||| || | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1782 CATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCGATGACGTTATA--C 1839 | ||||| || |||| |||| | | || |||| |||| ||| || |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1840 CAGGCATCATTATTGTATACCTTTGGACTGAGATCAAGGTGACCACAGAGATAATTATGT 1899 || |||| ||| | | ||| | ||| | | || | | ||||| | |||||||||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1900 GGGCCTAATGATCTTGCCCACATCGTCTTTCCTGTTCTACTATCACCTTCAATTACTAT- 1958 || ||||||||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1959 -ACTCATGGGTCTCAATGGCCGCGCAGCG 1986 ||| | ||||||||||| || | |||| Sbjct 2249097 GACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 207/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1689 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1748 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1749 TTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1808 ||| ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1809 --GTGGGGGTCGACGTCATCGATGACGTTATACCAGGCATCATTATTGTATACCTTTGGA 1866 |||| ||| | ||||||||||| ||| || | || || | | || ||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1867 C--TGAGATCAAGGTGACCACAGAGATAATTATGTGGGCCTAATGATCTTGCCCACATCG 1924 |||| || | |||||||| | || |||||| || || |||||||||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1925 TCTTTCCTGTTCTACTATCACCTTCAATTACTATACTCATGGGTCTCAATGGCCGCGCAG 1984 | || ||||| || ||||| ||| || | ||| | | ||||||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 1985 CGGC 1988 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 206/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 1689 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1748 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1749 TTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1808 ||| || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1809 --GTGGGGGTCGACGTCATCGATGACGTTATACCAGGCATCATTATT---GTATACCTTT 1863 |||| ||| | ||||||||||| ||| || | || | || || | | || ||| Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 1864 GGACTGAGATCAAGGTGACCACAGAGATAATTATGTGGGCCTAATGATCTTGCCCACATC 1923 || | || | |||||||| | || |||||| || || |||||||||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 1924 GTCTTTCCTGTTCTACTATCACCTTCAATTACTATACTCATGGGTCTCAATGGCCGCGCA 1983 || || | ||| || || ||||| || | | | | | ||||||| ||||||||| Sbjct 165527369 GTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCA 165527310 Query 1984 GCGGC 1988 ||||| Sbjct 165527309 GCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697458794464