Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009606.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq16 187 4e-44 seq13 161 2e-36 seq11 141 2e-30 >seq16 Length=188620566 Score = 187 bits (206), Expect = 4e-44 Identities = 244/336 (73%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1588 CTTTAATTTGAACTGGCTTGCCATACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCA 1647 |||| || ||||| || || | |||||||| |||| ||||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1648 GAAGTTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGTGACGTCGTCAATGACGTTAT 1707 | | ||| |||||||| |||| | |||| || | |||| ||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1708 ACTCCACTTCATTAGAGAACACTCTGGAATTGAAGTCGAGATGTCCACTGAGATAATTAT 1767 | ||||| || |||||||| || | | ||| ||||| | || ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1768 GTGGGCCTAATGCCCGAGCCCACATCGTCTTCCCTGTCCTAGAATCACCTTCTATGATAA 1827 || || |||| | |||||||| ||||| || || || ||||||||||| || || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1828 T--ACTAATAGGTCTCTCTGGCCGCGCAGCTGAATCCTTTCCAAAATAATCATCTGCCCA 1885 | ||| | |||||| ||| || | ||| || | |||||||||||||||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1886 TTCTTGCATCTCGTCCGGAACGTTAGTGAAAGAAGA 1921 || |||||| | | || ||||| ||||||||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 161 bits (178), Expect = 2e-36 Identities = 258/366 (70%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1554 CCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTGAACTGGCTTGCCATAC 1613 || || ||||| || | ||||| ||| || || ||||| | || ||||||| | || Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1614 TTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1673 ||||| || |||||||| | || || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1674 AGATATTGCGGTGTGACGTCGTCAATGACGTTATACTCCACTTCATTAGAGAACACTCTG 1733 || ||||| |||| | ||| || |||| ||| || || || || || ||||| ||| | Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1734 GAAT--TGAAGTCGAGATGTCCACTGAGATAATTATGTGGGCCTAATGCCCGAGCCCACA 1791 | ||| ||| | ||| |||| | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1792 TCGTCTTCCCTGTCCTAGAATCACCTTCTATGATAAT--ACTAATAGGTCTCTCTGGCCG 1849 | || || |||||||| ||||||| ||||||||| || ||| | |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1850 CGCAGCTGAATCCTTTCCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAACGTT 1909 |||||| | | |||||| || ||||||||||| ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1910 AGTGAA 1915 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 93.3 bits (102), Expect = 7e-16 Identities = 172/249 (69%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 1669 GCTTTAGATATTGCGGTGTGACGTCGTCAATGACGTTATACTCCACTTCATTAGAGAACA 1728 |||| | ||||| |||| | ||| || |||| ||| || || | | || ||||| | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1729 CTCTGGAATTGAAGTCGAGATGTCCACTGAGATAATTATGTGGGCCTAATGCCCGAGCCC 1788 || | |||| ||| | || |||| | || |||||| || | | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1789 ACATCGTCTTCCCTGTCCTAGAATCACCTTCTATGATAATACTAA--TAGGTCTCTCTGG 1846 |||| || || ||||| || |||| |||||||||||| |||| | | |||||| | || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1847 CCGCGCAGCTGAATCCTTTCCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAAC 1906 ||| ||||| | | | ||||| || ||||||||||||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1907 GTTAGTGAA 1915 |||||||| Sbjct 172134120 ATTAGTGAA 172134128 >seq11 Length=168460249 Score = 141 bits (156), Expect = 2e-30 Identities = 256/371 (69%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1547 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCACCTTTAATTTGAACTGGCTT 1606 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1607 GCCATACTTGCAATTTGACTGCCAGTCTTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTT 1666 ||| || ||||| | |||||||| | | || || || | || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1667 TAGCTTTAGATATTGCGGTGTGACGTCGTCAATGACGTTATACTCCACTTCATTAGAGAA 1726 | || ||||| |||| | ||| || |||| ||| || || | | || ||||| Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1727 CACTCTGGAATTGAAGTCGAGATGTCCACTGAGATAATTATGTGGGCCTAATGCCCGAGC 1786 ||| | ||| ||| | ||| |||| | || |||||| || || | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1787 CCACATCGTCTTCCCTGTCCTAGAATCACCTTCTATGATAAT--ACTAATAGGTCTCTCT 1844 |||||| || || | |||||| |||| ||||| |||||| | ||| | |||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATC 165527319 Query 1845 GGCCGCGCAGCTGAATCCTTTCCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGA 1904 ||||||||||| | | ||||| || ||||||||||||||||| || || || Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 1905 ACGTTAGTGAA 1915 || |||||||| Sbjct 165527258 ACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246266119696