Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009607.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq16 174 3e-40 seq13 116 6e-23 seq11 104 4e-19 >seq16 Length=188620566 Score = 174 bits (192), Expect = 3e-40 Identities = 245/340 (72%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1563 CTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAATCCTTTTGGGCCCCAA 1622 |||| || ||||| || |||| ||| ||||| |||| |||||| || |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1623 GCAATTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGATGTCATCAATGACGTTAT 1682 | ||||| |||||||| ||||| | || ||| | | | || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1683 ATTCAACATGATTTGAATAAACCCTAGGATTGAAATCTAGGTGTCCACTCAAATAATTAT 1742 |||| |||| || || ||||| ||||||| || |||| | ||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1743 GGGCCCCTAATGCACGTGCCCACATCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGA 1802 | || |||| | ||||||||| |||||||| |||| |||||||||||||| || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1803 T--ACTAATAGGTCGTTCCGGCCGCGCAGCGGCACCTCTC----CCAAAAGAGTCATCTG 1856 | ||| ||||| || || | |||| || || |||| | ||||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1857 CCCAAGCTTGCATCTCTCTCGGTACGCTAGTGAAAGAGGA 1896 |||| |||||| || |||||| | |||||||| || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 116 bits (128), Expect = 6e-23 Identities = 247/366 (67%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1529 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTAT 1588 || || ||||| || | ||| ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1589 TTGCAGTTTGATTGCCAATCCTTTTGGGCCCCAAGCAATTCTTTCCAGTGCTTTAACTTT 1648 |||||||| || ||||||| | ||| || |||| || |||||||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1649 AGATAGTGCGGTGCGATGTCATCAATGACGTTATATTCAACATGATTTGAATAAAC--CC 1706 || || |||| |||||||| |||| ||| || ||||| | ||||| | || Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1707 TAGGATTGAAATCTAGGTGTCCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACA 1766 | |||| || | || |||| | || ||||| || || | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1767 TCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGAT--ACTAATAGGTCGTTCCGGCCG 1824 | || || || || | ||||||| ||| ||||| || ||| | |||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1825 CGCAGCGGCACCTCTCCCAAAAGAGTCATCTGCCCAAGCTTGCATCTCTCTCGGTACGCT 1884 ||||||||| | ||||| | ||||||||| ||||| ||| ||||| | Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1885 AGTGAA 1890 |||||| Sbjct 89851553 AGTGAA 89851558 >seq11 Length=168460249 Score = 104 bits (114), Expect = 4e-19 Identities = 246/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1523 CCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTT 1582 ||| | || || ||||| |||| ||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1583 CCGTATTTGCAGTTTGATTGCCAATCCTTTTGGGCCCCAAGCAATTCTTTCCAGTGCTTT 1642 ||||||||||||| || ||||||| ||| || |||| || |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1643 AACTTTAGATAGTGCGGTGCGATGTCATCAATGACGTTATATTCAACATGATTTGAATAA 1702 || || || |||| |||||||| |||| ||| || ||| | | ||||| | Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1703 ACCCTAGGATTGAAATCTAGGTGTCCACTCAAATAATTATGGGCCCCTAATGCACGTGCC 1762 || | ||| || | || |||| | || ||||| || || | | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1763 CACATCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGAT--ACTAATAGGTCGTTCCG 1820 ||||| || || | || | |||| ||||| ||||| | ||| | |||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1821 GCCGCGCAGCGGCACCTCTCCCAAAAGAGTCATCTGCCCAAGCTTGCATCTCTCTCGGTA 1880 ||||||||||||| | ||||| | ||||||||| |||||| ||| |||| Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1881 CGCTAGTGAA 1890 | ||||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8188667054832