Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_009644.1 Length=2677 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-24 seq11 120 5e-24 seq16 82.4 1e-12 >seq13 Length=197258317 Score = 122 bits (134), Expect = 1e-24 Identities = 209/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1574 CCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATTTGAATTGGTTTGCCGTAC 1633 || || ||||| || | ||||||||| || ||||| || | || |||| ||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1634 TTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATATGCTTTAGATAG 1693 |||||||| |||||||| | | || || || ||||| || ||| ||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1694 TGCGGGTCGACATCATCAATGACGTTGTACCAGGCCTCATTTGAATACACTTTTGGG-CT 1752 || || | ||||| |||| |||||| | || ||||| | |||||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1753 T-AGATCAAGATGTCCACAAAGATAATTGTGACGACCCAAACTTCTGGCCCATAATGTTT 1811 | || || | ||| ||||| | || || || |||||| ||| ||||| | ||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1812 TCCCTGTCCTAGATGGACCTTCAATGATAATAGATATCGGCCTAAAGGGCCGCGCAGCGG 1871 | |||||||| || || ||| ||||| || || | || || | ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1872 C 1872 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 120 bits (132), Expect = 5e-24 Identities = 206/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1574 CCAGGATTGCAGAGGAAGATTGTTGGAATCCCTCCATTTATTTGAATTGGTTTGCCGTAC 1633 || || ||||| || | ||||||||| || ||||| || | || |||| |||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1634 TTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTCATATGCTTTAGATAG 1693 ||||||| |||||||| | || || || || ||||| || ||| ||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1694 TGCGGGTCGACATCATCAATGACGTTGTACCAGGCCTCATTTGAATACACTTTTGGGCTT 1753 || || | ||||| |||| |||||| || | ||||| | |||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1754 AGATCAAGATGTCCACAAAGATAATTGTGACGACCCAAACTTCTGGCCCATAATGTTTTC 1813 | || | ||| ||||| | || || || | |||||| ||| ||||| | |||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1814 CCTGTCCTAGATGGACCTTCAATGATAATAGATATCGGCCTAAAGGGCCGCGCAGCGGC 1872 | |||||| || ||||| ||||| | || | || || | |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 >seq16 Length=188620566 Score = 82.4 bits (90), Expect = 1e-12 Identities = 162/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1610 TTTATTTGAATTGGTTTGCCGTACTTGCAGTTGGACTGCCAGTCTCTCTGGGCCCCCATA 1669 || || |||| ||||| | ||||||||| || | ||||||||||| || || || | Sbjct 2249331 TTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGT 2249272 Query 1670 AATTCCTTCATATGCTTTAGATAGTGCGGGTCGACATCATCAATGACGTTGTA--CCAGG 1727 ||||||||| || |||| | | || |||| || | |||||| ||||| || ||| Sbjct 2249271 AATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA-- 2249214 Query 1728 CCTCATTTGAATACACTTTTGGGCTTAGATCAAGATGTCCACAAAGATAATTGTGACGAC 1787 | || || || | || | || | | || | || |||| | |||||| || | | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1788 CCAAACTTCTGGCCCATAATGTTTTCCCTGTCCTAGATGGACCTTCAATGATAATAGA 1845 |||| ||| ||||| | ||| || || || || || ||||||||| || || || Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8457462690864