Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010238.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq16 105 1e-19 seq11 86.0 1e-13 >seq16 Length=188620566 Score = 105 bits (116), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 1728 CTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTGGGCCCCCA 1787 |||| || || | || |||| |||||| |||| ||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1788 TGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGATATTGTA--CCA 1845 ||||| || |||| |||| | || || | |||| |||||| | || || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1846 GGCATCATTATTGTAGACCTTAGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGG 1905 |||| ||| | | ||| |||| | | ||||| || |||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1906 TCCCAGTGACCTAGCCCACATTGTCTTCCCTGTCCTACTATCACCCTCAAT 1956 ||||| ||| || |||||||||||||| || || || |||||| ||||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq11 Length=168460249 Score = 86.0 bits (94), Expect = 1e-13 Identities = 206/306 (67%), Gaps = 12/306 (4%) Strand=Plus/Minus Query 1693 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGTTCTGGCTTTCCGTA 1752 |||||| ||||| || | ||| || || || || ||||| | | |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1753 CTTTGTATTT-GAAAGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGT 1811 |||| | | || |||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1812 AGTGGGGATCGACGTCATCAATGATATTGTACCAGGCATCATTATT---GTAGACCTTAG 1868 | || || | |||||| ||||| ||||| | || | || || | |||| || Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTT 165527429 Query 1869 GGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCCAGTGACCTAGCCCACATTG 1928 | | |||| | ||| ||||| | || |||||| ||||| || || |||||||||| Sbjct 165527428 TGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTG 165527369 Query 1929 TCTTCCCTGTCCTACTATCACCCTCAATCA--CTACACTTATTGGTCTATTGGCCCGCGC 1986 | || | |||||| || ||| | || | | ||| ||||||| | | |||||| Sbjct 165527368 TTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGC 165527311 Query 1987 AGCGGC 1992 |||||| Sbjct 165527310 AGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710258586656