Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_010238.1
Length=2756
Score E
Sequences producing significant alignments: (Bits) Value
seq16 105 1e-19
seq11 86.0 1e-13
>seq16
Length=188620566
Score = 105 bits (116), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 1728 CTTTAATTTGTTCTGGCTTTCCGTACTTTGTATTTGAAAGCCAGTCCCTTTGGGCCCCCA 1787
|||| || || | || |||| |||||| |||| ||||||| ||||| || || |
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1788 TGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGATATTGTA--CCA 1845
||||| || |||| |||| | || || | |||| |||||| | || || |||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214
Query 1846 GGCATCATTATTGTAGACCTTAGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGG 1905
|||| ||| | | ||| |||| | | ||||| || |||| ||||||||||||
Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156
Query 1906 TCCCAGTGACCTAGCCCACATTGTCTTCCCTGTCCTACTATCACCCTCAAT 1956
||||| ||| || |||||||||||||| || || || |||||| |||||
Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105
>seq11
Length=168460249
Score = 86.0 bits (94), Expect = 1e-13
Identities = 206/306 (67%), Gaps = 12/306 (4%)
Strand=Plus/Minus
Query 1693 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGTTCTGGCTTTCCGTA 1752
|||||| ||||| || | ||| || || || || ||||| | | |||||| |||||
Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545
Query 1753 CTTTGTATTT-GAAAGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGT 1811
|||| | | || |||| | | ||| || || || || ||||| ||||| | | ||
Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486
Query 1812 AGTGGGGATCGACGTCATCAATGATATTGTACCAGGCATCATTATT---GTAGACCTTAG 1868
| || || | |||||| ||||| ||||| | || | || || | |||| ||
Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTT 165527429
Query 1869 GGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCCAGTGACCTAGCCCACATTG 1928
| | |||| | ||| ||||| | || |||||| ||||| || || ||||||||||
Sbjct 165527428 TGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTG 165527369
Query 1929 TCTTCCCTGTCCTACTATCACCCTCAATCA--CTACACTTATTGGTCTATTGGCCCGCGC 1986
| || | |||||| || ||| | || | | ||| ||||||| | | ||||||
Sbjct 165527368 TTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGC 165527311
Query 1987 AGCGGC 1992
||||||
Sbjct 165527310 AGCGGC 165527305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8710258586656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |