Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010294.1 Length=2604 Score E Sequences producing significant alignments: (Bits) Value seq13 104 4e-19 seq16 102 1e-18 seq11 100 5e-18 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 206/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1553 CCAGGATTGCAGAGGAAGATAGCGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1612 || || ||||| || | ||| | || || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1613 TTGCAGTTTGATTGCCAATCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAA 1672 |||||||| || ||||||| ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1673 TGCGGATTGACGTCATCGATTACGTTATA--CCACGCATCATTGGAGTAGA--TTTTTGG 1728 || || | ||||||||| | ||| || | ||| || || ||| ||| |||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1729 ATTGAGATCGAGATGACCACATAGGTAATTGTGAGGACCGAGACTCCGGGCCCATTGTGT 1788 ||||| || | ||||||||||| ||| || || || | | | ||||| ||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1789 TTTGCCCGTTCTTGATTGTCCCTCAATAACGATCGATATAGGTCTCAATGGCCGCGCAGC 1848 ||| || || || || | | || || | || || | ||||||| ||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1849 GG 1850 || Sbjct 89851499 GG 89851500 >seq16 Length=188620566 Score = 102 bits (112), Expect = 1e-18 Identities = 185/266 (70%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 1587 CTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTGCCAATCCCTTTGGGCCCCCA 1646 |||| || |||| || |||| ||| ||||| |||| |||||| || ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1647 TGAATTCTTTAAAGTGCTTTAGATAATGCGGATTGACGTCATCGATTACGTTATACCACG 1706 ||||| || |||| |||| | | || || || |||| ||| || |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1707 CATCATTGGAGTAGATTTTTGGATTGAGATCGAGATGACCACATAGGTAATTGTGAGGAC 1766 |||| || ||| | | | ||||| | || | || ||||| || ||||| || | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1767 CGA--GACTCCGGGCC-CATTGTGTTTTGCCCGTTCTTGATTGTCCCTCAATAACGATCG 1823 | | || || | || |||||| ||| || |||||||| | || ||||| | || | Sbjct 2249153 CCAATGA-TCTTGCCCACATTGTCTTT--CCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1824 ATATAGGTCTCAATGGCCGCGCAGCG 1849 | |||||||||||| || | |||| Sbjct 2249096 ACTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 100 bits (110), Expect = 5e-18 Identities = 201/298 (67%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 1553 CCAGGATTGCAGAGGAAGATAGCGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1612 || || ||||| || | ||| | || || |||||||| | || ||||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1613 TTGCAGTTTGATTGCCAATCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAA 1672 ||||||| || ||||||| | ||| || || || || ||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1673 TGCGGATTGACGTCATCGATTACGTTATACCACGCATCATTGGAGTAGATTTTTGGATTG 1732 || || | ||||||||| | ||| || || | || ||| ||| |||| ||| Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1733 AGATCGAGATGACCACATAGGTAATTGTGAGGACCGAGACTCCGGGCCCATTGTGTTTTG 1792 | || | ||||||||||| ||| || || || | | | ||||| ||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1793 CCCGTTCTTGATTGTCCCTCAATAACGATCGATATAGGTCTCAATGGCCGCGCAGCGG 1850 | || || || | || | || | | || | ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8223866483360