Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010307.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq11 125 1e-25 seq13 123 4e-25 seq16 98.7 2e-17 >seq11 Length=168460249 Score = 125 bits (138), Expect = 1e-25 Identities = 218/307 (71%), Gaps = 15/307 (5%) Strand=Plus/Minus Query 1667 CCTGGGATTGCAGAGGAAGATTGTTGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTA 1726 |||||| ||||| || | ||||||||| ||||| ||||| | || ||||||| ||||| Sbjct 165527603 CCTGGG-TTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1727 CTTGG-GTATTGCTTTGGCAGTCCCTTTGGGCCCCCATAAATTCTTTAAAGTGCTT-AGG 1784 ||| ||| || | || | | ||| || || ||||| ||||| ||||| | | | Sbjct 165527544 TTTGCAGTAAGACT--GCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAG 165527487 Query 1785 TAGTGCGGGTCTACGTCATCAATGACGTTGTACCAGGCATCGTTGCT---GTATACTTTT 1841 || || || || |||||| |||| |||||| | || ||||| | | | |||||| Sbjct 165527486 TATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 1842 GGACTGAGGTCTAAATGACCACATAGGTAGTTATGTGGACCTAGTGACCTGGCCCACATT 1901 || |||| | ||||||||||| |||||||||| || | || || ||||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 1902 GTTTTTCCAGTCCTGCTGTCACCTTCTATTA-CGATG-CTAATGGGCCTCCATGGCCGCG 1959 ||||| | |||||| | ||||| ||| | | || || | || ||| ||||||| Sbjct 165527369 GTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCG 165527312 Query 1960 CAGCGGC 1966 ||||||| Sbjct 165527311 CAGCGGC 165527305 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 212/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 1667 CCTGGGATTGCAGAGGAAGATTGTTGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTA 1726 |||||| ||||| || | ||||||||| ||||| ||||| | || ||||||| |||| Sbjct 89851201 CCTGGG-TTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1727 CTTGGGTATTGCTTTGGCAGTCCCTTTGGGCCCCCATAAATTCTTTAAAGTGCTT-AGGT 1785 ||| | | | | || | ||| || || ||||| ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACT-GCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1786 AGTGCGGGTCTACGTCATCAATGACGTTGTACCAGGCATCGTTGCTGTATACTTTTGGAC 1845 | || || || |||||| |||| |||||| | ||||| | | |||||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1846 --TGAGGTCTAAATGACCACATAGGTAGTTATGTGGACCTAGTGACCTGGCCCACATTGT 1903 ||||||| | ||||||||||| |||||||||| || | || || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1904 TTTTCCAGTCCTGCTGTCACCTTCTATTACGATGCTAATGGGCCTCCATGGCCGCGCAGC 1963 ||| || |||||| |||| |||||| | || | || ||| ||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1964 GGC 1966 ||| Sbjct 89851499 GGC 89851501 Score = 89.7 bits (98), Expect = 9e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 2220 GATCTTCCATCGATCTGGAAAGATCCATGA-TCAAGTACATCTCCGTCTTTCTCCATGTA 2278 ||| |||||| |||| ||| |||| | || | |||||| |||||||||| |||||| Sbjct 172134328 GATGTTCCATGTTTCTG-AAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTA 172134386 Query 2279 GGTTTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCT 2338 || ||||| | |||||| ||| |||| ||||| || | | ||| | Sbjct 172134387 TCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGT 172134446 Query 2339 ATTTGGG-GATATGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTGCCTTCGAATT 2397 ||||||| ||| |||| || |||||||| ||||| ||||||||||| ||| | | Sbjct 172134447 ATTTGGGTGAT-TGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCT 172134505 Query 2398 GGATGAGAACATGCAGGTGAGGAGTCCCATCTTCATGTAATTCTCTGCAAAT 2449 | || | |||||| || ||||| | | ||||| || | |||| |||| || Sbjct 172134506 GCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGAT 172134557 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/159 (72%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 1776 GTGCTT-AGGTAGTGCGGGTCTACGTCATCAATGACGTTGTACCAGGCATCGTTGCT--- 1831 |||||| | ||| || || || |||||| |||| |||||| | || ||||| | Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGA 172133937 Query 1832 GTATACTTTTGGACTGAGGTCTAAATGACCACATAGGTAGTTATGTGGACCTAGTGACCT 1891 | | |||||| ||||||| || || ||||||| |||||||||| || | || || Sbjct 172133938 GAAGACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCT 172133996 Query 1892 GGCCCACATTGTTTTTCCAGTCCTGCTGTCACCTTCTAT 1930 |||||||||||||| || || ||| | ||||||||| Sbjct 172133997 TGCCCACATTGTTTTGCCTGTTCTGGAATTACCTTCTAT 172134035 >seq16 Length=188620566 Score = 98.7 bits (108), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1702 CTTTAATTTGAATTGGCTTCCCGTACTTGGGTATTGCTTTGGCAGTCCCTTTGGGCCCCC 1761 |||| || |||| || || | ||||||| |||||| | ||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1762 ATAAATTCTTTAAAGTGCTT-AGGTAGTGCGGGTCTACGTCATCAATGACGTTGTA--CC 1818 | ||||| || |||| || | | || |||| |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1819 AGGCATCGTTGCTGTATACTTTTGGACTGAGGTCTAAATGACCACATAGGTAGTTATGTG 1878 | ||||||| | | || | ||| | | |||||||| ||||| || || |||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1879 GACCTAGTGACCTGGCCCACATTGTTTTTCCAGTCCTGCTGTCACCTTCTATTA 1932 || | ||| || ||||||||||| ||||| || || |||||||| |||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTA 2249103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8611060197168