Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010313.1 Length=2803 Score E Sequences producing significant alignments: (Bits) Value seq16 111 3e-21 seq13 96.9 6e-17 seq11 91.5 3e-15 >seq16 Length=188620566 Score = 111 bits (122), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 1757 CTTTAATTTGAATGGGCTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1816 |||| || |||| || || | ||| ||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1817 TGAACTCTTTAAAGTGTTTGAGATAGTGGGGATCGACGTCATCAATGACGTTATA--CCA 1874 || || || ||||||| | | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1875 AGCATCATTTGAATACACCTTTGGACTCAGGTCTAGATGGCCACACAAGTAATTGTGTGG 1934 |||| || || | ||| | ||| ||| ||||| || |||| || ||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1935 ACCTAATGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACCTTCAATAACTAT 1991 || ||||| || |||||||||||||| || || | |||||||||||| | ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTAT 2249099 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1723 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAT 1782 ||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1783 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGATAG 1842 ||| ||| ||||| | ||| || || || |||||||| |||| |||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1843 TGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGAC-- 1900 || || | |||||| |||| ||| || | | || ||||| | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1901 TCAGGTCTAGATGGCCACACAAGTAATTGTGTGGACCTAATGACCTGGCCCACATTGTCT 1960 | ||||| | ||| ||||| | ||| || ||| || || || || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1961 TGCCTGTACGACTATCACCTTCAATAACTATATTAAC--CGGTCTCCAAGGCCGCGCAGC 2018 | ||||| | ||||| ||| || | |||| || |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGA--TTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 2019 GGC 2021 ||| Sbjct 89851499 GGC 89851501 Score = 77.0 bits (84), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 2288 TCTGAAACTCTCCCCATTCAAGGGTGTCTCCGTCTTTATCGATATAGGACTTGACGTCGG 2347 |||||||| |||||| || | |||| |||||||| | ||||| ||||| | Sbjct 89851771 TCTGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGA 89851830 Query 2348 AGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCGGGTCGGG-GATACC 2406 | ||||||||||| ||| || |||||||| || | | ||| | ||| ||| Sbjct 89851831 AACTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGAT-TG 89851889 Query 2407 AAGTCGAAGAATCTGTTATTTTGGCATTT--GTATTTCCCCTCGAATTGAATGAGCGCAT 2464 | ||| |||||||| |||||| ||||| | ||| || | || || | ||| Sbjct 89851890 ATGTCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACAT 89851949 Query 2465 GCAGATGAGGTTCCCCATTTTCATGCAGTTCTCTGCAGATTTTGATATATTTT 2517 | |||||||||| | | ||| |||| |||||||||||| |||||| ||| Sbjct 89851950 GTAGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGATGGCGATATACTTT 89852002 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 202/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1723 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAT 1782 ||||| ||||| || | ||| || || || || ||||| | || | ||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1783 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGATAG 1842 ||| || ||||| | | ||| || || || |||||||| |||| ||| || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1843 TGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGACTC 1902 || || | |||||| |||| ||| || ||| | ||||| | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1903 AGGTCTAGATGGCCACACAAGTAATTGTGTGGACCTAATGACCTGGCCCACATTGTCTTG 1962 |||| | ||| ||||| | ||| || ||| || || || || ||||||||||| ||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1963 CCTGTACGACTATCACCTTCAATAACTATATTAAC--CGGTCTCCAAGGCCGCGCAGCGG 2020 | ||| | || ||||| || | | || || |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGA--TTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 2021 C 2021 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8857451967360