Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010435.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq13 123 4e-25 seq11 109 1e-20 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 214/304 (70%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 1672 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTAT 1731 || || ||||| || | |||||| ||||| || ||||| | || ||| || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTGAGGAAA 1791 || ||| || ||||| | ||| || || ||||||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1792 TGCGGATCGACGTCATCAATGACGTT-AAACCACGCGTCGTTGCTGTACAC-TTTTGGGC 1849 || || | |||||| |||| ||| || || ||||||| | | || |||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCA-ACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1850 TT-AGATCTAAATGCCCACATAGATAGTTATGTGGGCCTAATGATCTAGCCCATATCGTC 1908 || || || | ||| ||||||| ||||||||| || || ||||| ||||| || || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1909 TTCCCAGTACGACTATCTCCCTCTATGACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAG 1966 || || || | ||| | ||||||| ||| ||||| ||||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1967 CGGC 1970 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 109 bits (120), Expect = 1e-20 Identities = 206/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1672 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTAT 1731 || || ||||| || | |||||| ||||| || ||||| | || ||| || |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTGAGGAAA 1791 || || || ||||| | | ||| || || ||||||||||| ||||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1792 TGCGGATCGACGTCATCAATGACGTTAAACCACGCGTCGTTGCTGTACACTTTTGGGCTT 1851 || || | |||||| |||| ||| | |||| ||| | | |||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1852 AGATCTAAATGCCCACATAGATAGTTATGTGGGCCTAATGATCTAGCCCATATCGTCTTC 1911 | || | ||| ||||||| ||||||||| || || ||||| ||||| || || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1912 CCAGTACGACTATCTCCCTCTATGACTAT--ACTTTGAGGTCTCAGGGGCCGCGCAGCGG 1969 | || | || || | ||||| | | ||||| ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1970 C 1970 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659059417888