Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010439.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq13 87.8 3e-14 seq11 82.4 1e-12 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 1696 CTTTAATTTGAATTGGTTTCCCGTACTT-CGTGTTGCTTTGCCAGTCTCTTTGGGCCCCC 1754 |||| || |||| ||||| | |||||| | |||||| ||||||||||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1755 ATGAACTCTTTAAAATGCTTTAGATAATGCGGATCAACGTCATCAATGACGTTATA--CC 1812 | || || || | || |||| | | || || | ||||| |||||| |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1813 AAGCATCATTGCTGTAAACCTTTGGGCTTAGGTCCAAATGTCCGCATAGATAATTGTGTT 1872 | |||| || | ||||| | || | | ||| |||| || | || |||||| ||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1873 GGCCCAGAGATCTAGCCCACATCGTCTTTCCTGTTCTACTATTGCCTTCTATTA 1926 |||| ||||| |||||||| |||||||| ||||| || ||||| |||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTA 2249103 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 204/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1662 CCAGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1721 || || ||||| || | ||| || ||||| || ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1722 TTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAATGCTTTAGATAA 1781 || ||| ||||| | | ||| || || || |||||||| | ||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1782 TGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTAAACCTTTGGG-CT 1840 || || | |||||| |||| ||| || | | || || | | || ||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1841 T-AGGTCCAAATGTCCGCATAGATAATTGTGTTGGCCCAGAGATCTAGCCCACATCGTCT 1899 | ||||||| ||| || |||| || || |||| |||| |||||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1900 TTCCTGTTCTACTATTGCCTTCTATTACAAT--ACTTATGGGCCTCCAAGGCCGCGCAGC 1957 | ||||| || || | |||||| | || |||| || ||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1958 GGC 1960 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 200/301 (66%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1662 CCAGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1721 || || ||||| || | ||| || ||||| || ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1722 TTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAATGCTTTAGATAA 1781 || || ||||| | || ||| || || || |||||||| | ||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1782 TGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTAAACCTTTGGGCTT 1841 || || | |||||| |||| ||| || ||| | || | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1842 AGGTCCAAATGTCCGCATAGATAATTGTGTTGGCCCAGAGATCTAGCCCACATCGTCTTT 1901 |||||| ||| || |||| || || ||| |||| |||||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1902 CCTGTTCTACTATTGCCTTCTATTACAAT--ACTTATGGGCCTCCAAGGCCGCGCAGCGG 1959 | ||| || ||| |||| ||| | | |||| || ||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1960 C 1960 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604660301072