Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010440.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 6e-17 seq11 82.4 1e-12 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 209/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1683 TCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1742 ||| || ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1743 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATA 1802 ||| ||| ||||| | ||| || || || || ||||| | ||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1803 --GTGGGGGTSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGA 1860 |||| ||| | |||||| |||| |||||| | | || || | |||| ||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1861 -CTTAAG-TCCAGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCG 1918 ||| || |||| ||| ||||||| ||| || ||| |||| || || |||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1919 TCTTCCCTGTCCTACTATCGCCCTCTATTACAAT--ACTTTTAGGTCTCCAAGGCCGCGC 1976 | || |||||||| ||| | ||||| | || ||||| |||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1977 AGCGGC 1982 |||||| Sbjct 89851496 AGCGGC 89851501 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 203/304 (67%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1683 TCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1742 ||| || ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1743 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATA 1802 ||| || ||||| | | ||| || || || || ||||| | ||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1803 --GTGGGGGTSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGA 1860 |||| ||| | |||||| |||| |||||| ||| | || | |||| ||| Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1861 CTTAAGTCCAGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCGTC 1920 | ||||| ||| ||||||| ||| || ||| |||| || || |||||||| || Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1921 TTCCCTGTCCTACTATCGCCCTCTATTACAAT--ACTTTTAGGTCTCCAAGGCCGCGCAG 1978 || | |||||| || || | ||| | | ||||| |||||| |||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAG 165527309 Query 1979 CGGC 1982 |||| Sbjct 165527308 CGGC 165527305 Lambda K H 0.635 0.409 0.915 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726258326896