Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_010440.1
Length=2761
Score E
Sequences producing significant alignments: (Bits) Value
seq13 96.9 6e-17
seq11 82.4 1e-12
>seq13
Length=197258317
Score = 96.9 bits (106), Expect = 6e-17
Identities = 209/306 (68%), Gaps = 10/306 (3%)
Strand=Plus/Plus
Query 1683 TCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1742
||| || ||||| || | ||| || || || || ||||| | || | ||||| ||||
Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259
Query 1743 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATA 1802
||| ||| ||||| | ||| || || || || ||||| | ||||| | ||
Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319
Query 1803 --GTGGGGGTSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGA 1860
|||| ||| | |||||| |||| |||||| | | || || | |||| |||
Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377
Query 1861 -CTTAAG-TCCAGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCG 1918
||| || |||| ||| ||||||| ||| || ||| |||| || || |||||||| |
Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437
Query 1919 TCTTCCCTGTCCTACTATCGCCCTCTATTACAAT--ACTTTTAGGTCTCCAAGGCCGCGC 1976
| || |||||||| ||| | ||||| | || ||||| |||||| ||||||||
Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495
Query 1977 AGCGGC 1982
||||||
Sbjct 89851496 AGCGGC 89851501
>seq11
Length=168460249
Score = 82.4 bits (90), Expect = 1e-12
Identities = 203/304 (67%), Gaps = 8/304 (3%)
Strand=Plus/Minus
Query 1683 TCCCGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1742
||| || ||||| || | ||| || || || || ||||| | || | ||||| |||||
Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545
Query 1743 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATA 1802
||| || ||||| | | ||| || || || || ||||| | ||| | | ||
Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485
Query 1803 --GTGGGGGTSGACGTCATCAATGACGTTGTACCAAGCATCATTACTGTAGACCTTTGGA 1860
|||| ||| | |||||| |||| |||||| ||| | || | |||| |||
Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427
Query 1861 CTTAAGTCCAGATGTCCACATAAGTAATTGTGTGGACCCAGTGACCTAGCCCACATCGTC 1920
| ||||| ||| ||||||| ||| || ||| |||| || || |||||||| ||
Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367
Query 1921 TTCCCTGTCCTACTATCGCCCTCTATTACAAT--ACTTTTAGGTCTCCAAGGCCGCGCAG 1978
|| | |||||| || || | ||| | | ||||| |||||| ||||||||||
Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAG 165527309
Query 1979 CGGC 1982
||||
Sbjct 165527308 CGGC 165527305
Lambda K H
0.635 0.409 0.915
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8726258326896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |