Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010441.2 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-21 seq11 96.9 6e-17 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 212/306 (69%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1685 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1744 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1745 TTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1804 ||| ||| ||||| | || || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1805 --GTGGGGGTCGACGTCATCGATGACGTTGTACCAAACATTATTACTGTAGACCTTTGGA 1862 |||| ||| | ||||||||||| |||||| ||| | || | |||| ||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1863 -CTTAAG-TCCAGATGTCCACATAAATAATTGTGTGGACCCAGTGACCTAGCCCACATCG 1920 ||| || |||| ||| ||||||| || || ||| |||| || || |||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1921 TCTTCCCTGTCCTACTATCACCCTCTACCACTAT--ACTTTTAGGTCTCCACGGCCGCGC 1978 | || |||||||| ||||| |||| | ||| ||||| |||||| ||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1979 AGCGGC 1984 |||||| Sbjct 89851496 AGCGGC 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 206/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1685 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTA 1744 |||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1745 TTTCGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1804 ||| || ||||| | | || || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1805 --GTGGGGGTCGACGTCATCGATGACGTTGTACCAAACATTATTACTGTAGACCTTTGGA 1862 |||| ||| | ||||||||||| |||||| | | || || | |||| ||| Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1863 CTTAAGTCCAGATGTCCACATAAATAATTGTGTGGACCCAGTGACCTAGCCCACATCGTC 1922 | ||||| ||| ||||||| || || ||| |||| || || |||||||| || Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1923 TTCCCTGTCCTACTATCACCCTCTACCACTAT--ACTTTTAGGTCTCCACGGCCGCGCAG 1980 || | |||||| || ||| | || | | | ||||| |||||| ||||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAG 165527309 Query 1981 CGGC 1984 |||| Sbjct 165527308 CGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8691058898368