Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010618.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 7e-16 seq11 80.6 5e-12 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 234/350 (67%), Gaps = 8/350 (2%) Strand=Plus/Plus Query 2225 TCTTGCAGATCTTGCATCGATTTGAAACTCTCCCCAATCGATGATGTCTCCGTCTTTCTT 2284 ||| | |||| || ||| | |||||| ||||| ||||| | || |||||||||| Sbjct 172134321 TCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTG 172134380 Query 2285 GATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGC 2344 || || |||| | | ||||||||||| ||| |||| |||||| || | | Sbjct 172134381 CATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTC 172134440 Query 2345 TGACCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTTCCTT 2403 ||| | ||||| ||| ||||| |||||||| ||| || |||||| |||| || Sbjct 172134441 AGACGTATTTGGGTGAT-TGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTT 172134499 Query 2404 CGAATTGGATAAGCACGTGGAGATGAGGAGACCCATCGTCGTGAAGCTCTCTGCAGATTC 2463 | | || || | || || |||||||| | || ||||| || ||| ||||||| Sbjct 172134500 CCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAG 172134559 Query 2464 TGATATAT-TTCTTGTTAGTTGGGGTGACTAGGT----TTTGTAATTGGGAAAGTGCGTC 2518 ||||||| | |||| | | || | || | ||| || | ||| ||| | Sbjct 172134560 CGATATATATACTTGATCGCTGAAG-GAATTGGTAGAACTTTCAGTTGTTCAAGATAATA 172134618 Query 2519 TTCTTTGGAGAGAGAACACTTGGGATAAGTGATGAAATAGTTTTTAGCAT 2568 ||||||||| | | | || || || || |||||||| ||||| || |||| Sbjct 172134619 TTCTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCAT 172134668 Score = 86.0 bits (94), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 2247 TGAAACTCTCCCCAATCGATGATGTCTCCGTCTTTCTTGATATAGGACTTGACGTCGGAG 2306 |||||| |||||| ||||| ||||| |||||||| | ||||| ||||| | | Sbjct 89851773 TGAAACGTTCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGAAA 89851832 Query 2307 CTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGG-GATACCAG 2365 ||||||||||| ||| || |||||||| || | | ||| | ||||| ||| | Sbjct 89851833 CTGGATTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGAT-TGAT 89851891 Query 2366 GTCGAAGAATCTGTTATTCTGGCATTT--GTATTTTCCTTCGAATTGGATAAGCACGTGG 2423 ||| |||||||| ||| || ||||| | |||| ||| | || || | || || Sbjct 89851892 GTCAAAGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACATGT 89851951 Query 2424 AGATGAGGAGACCCATCGTCGTGAAGCTCTCTGCAGATTCTGATATATTT 2473 |||||||| | || ||||| | ||||||||||| |||||| || Sbjct 89851952 AGATGAGGTTTACTGTCTTCGTGCAATTCTCTGCAGATGGCGATATACTT 89852001 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 5e-12 Identities = 200/302 (66%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1679 TCCTGGATTGCAAAGGAAGATAGTTGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTA 1738 |||||| ||||| || | ||| ||||| || || ||||| | || ||||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1739 CTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1798 || || ||||| | | ||| || || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1799 GTGGGGATCGACGTCATCAATGACGTTATACCATGCATCATTCCTGTATACCTTTGGACT 1858 || || | |||||| |||| ||| || || | || | | || ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1859 GAGATCCAAATGTCCGCACAGATAATTATGTAGTCCTAATGACCTGGCCCACATAGTCTT 1918 | | |||| ||| || || | || |||||| ||| || || || |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1919 CCCCGTTCTACTATCACCCTCTATGACTAT--ACTTATCGGTCTTAAAGGCCGCGCAGCG 1976 | || || || ||| | ||||| | | |||| ||||| | |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1977 GC 1978 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681459054224