Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010647.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq13 127 3e-26 seq11 125 1e-25 seq16 109 9e-21 >seq13 Length=197258317 Score = 127 bits (140), Expect = 3e-26 Identities = 216/308 (70%), Gaps = 10/308 (3%) Strand=Plus/Plus Query 1563 CCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTTTCCATAT 1622 || || ||||| || | ||||| || || |||||||| | || ||||| | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1623 TTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTTTAATTTC 1682 || ||||| |||||||| | |||||| ||||| ||||||||||| ||||| || | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT-- 89851318 Query 1683 AAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGAC--AC 1740 || | | || ||||||||| |||| |||||| ||| || | || || |||| Sbjct 89851319 --ATTGTGGTGG--TATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1741 GCGAATTGAAGTCGAGGTGACC-CATGAGATAATTGTGTGGTCCCAATGAACGAGCCCAC 1799 | |||| ||| | ||||| ||| | || || ||| |||||| || | |||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACAT-ACGTAGTTATGTTTTCCCAAAGATCTTGCCCAC 89851433 Query 1800 ATTGTTTTGCCTGTTCTTGAGTCACCCTCGACGATGATACTCATATATCTCTCCGGCCGC 1859 |||||||| ||||| || || |||| || | ||| || | | |||| ||||||| Sbjct 89851434 ATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGC 89851493 Query 1860 GCAGCGGC 1867 |||||||| Sbjct 89851494 GCAGCGGC 89851501 Score = 78.8 bits (86), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 1697 TATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATAGACACGCGAATTGAAGTCGAG 1756 ||||||||| |||| |||||| |||||| || || |||| |||| ||| | Sbjct 172133902 TATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAA 172133961 Query 1757 GTGACCCATGAGATAATTGTGTGGTCCCAATGAACGAGCCCACATTGTTTTGCCTGTTCT 1816 || | ||| | || || ||| ||||| || | ||||||||||||||||||||||| Sbjct 172133962 TTGCCACATATG-TAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCT 172134020 Query 1817 TGAGTCACCCTCGACGATGATACT--CATATATCTCTCCGGCCGCGCAGCGGC 1867 || | ||| || | ||| |||| | | |||| ||||||| |||||||| Sbjct 172134021 GGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAGCGGC 172134071 >seq11 Length=168460249 Score = 125 bits (138), Expect = 1e-25 Identities = 218/313 (70%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 1556 ACCCTCACCAGGATTGCACAGCACGATTGAAGGGATACCTCCTTTAATTTGAACCGGCTT 1615 |||| | || || ||||| |||| ||||| || || |||||||| | || ||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1616 TCCATATTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAATTAACTCTTTCCAATGCTT 1675 || ||||| |||| |||||||| | | |||||| ||||| ||||||||||| ||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1676 TAATTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTACTCAGCGGCATTGGAATA 1735 || | || | | || ||||||||| |||| |||||| |||||| || || | Sbjct 165527490 GAAGT----ATTGTGGTGG--TATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1736 GACACGCGAATTGAAGTCGAGGTGACC-CATGAGATAATTGTGTGGTCCCAATGAACGAG 1794 ||| ||| ||| | ||||| ||| | || || ||| |||||| || | | Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACAT-ATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1795 CCCACATTGTTTTGCCTGTTCTTGAGTCACCCTCGACGATGATACTCATATATCTCTCCG 1854 ||||||||||||||| ||| || || | ||| | | ||| | | | |||| || Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCG 165527318 Query 1855 GCCGCGCAGCGGC 1867 ||||||||||||| Sbjct 165527317 GCCGCGCAGCGGC 165527305 >seq16 Length=188620566 Score = 109 bits (120), Expect = 9e-21 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 1597 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTTGACTGCCAGTCCCTTTGAGCCCCAA 1656 |||| || |||||||| |||| || || || |||| |||||||| ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1657 TTAACTCTTTCCAATGCTTTAATTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGT 1716 ||| || ||||| || ||||| | | | ||| | | || |||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1717 ACTCAGCGGCATTGGAATAGACACGCGAATTGAAGTCGAGGTGACCCATGAGATAATTGT 1776 | || | | || || | || | ||| ||||| | | ||| | | |||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1777 GTGGTCCCAATGAACGAGCCCACATTGTTTTGCCTGTTCTTGAGTCACCCTC 1828 || ||||||||| | ||||||||||| || || |||||||| ||||| || Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTC 2249108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8307065132608