Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010791.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq16 100 5e-18 seq11 98.7 2e-17 >seq16 Length=188620566 Score = 100 bits (110), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1717 CTTTAATTTGAATTGGTTTCCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1776 |||| || |||| ||||| | ||| ||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1777 TGAACTCTTTAAAGTGCTTTAAGTAGTGGGGGTCTACATCATCAATCACGTTGTA--CCA 1834 || || || |||| ||||| | || |||| || | |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1835 GGCATCATTATTGTACACTCTTGGACTGAGGTCTAAGTGACCACATAGATAATTATGTGG 1894 |||| ||| | | || | ||| | | |||||| | ||||| || |||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1895 CCCCAACGACCTGGCCCACATTGTTTTGCCAGT 1927 ||||| || || ||||||||||| || || || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 1683 CCTGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAATTGGTTTCCCGTAT 1742 ||||| ||||| || | ||| || || || || ||||| | || |||| || |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1743 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAAGTAG 1802 ||| || ||||| | | ||| || || || |||||||| ||||| | ||||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1803 TGGGGGTCTACATCATCAATCACGTTGTACCAGGCATCATTATT---GTACACTCTTGGA 1859 || || || ||||| || | |||||| | || | || || | | ||| || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1860 CTGAGGTCTAAGTGACCACATAGATAATTATGTGGCCCCAACGACCTGGCCCACATTGTT 1919 || |||| | |||||||||| || |||||| ||||| || || |||||||||||| Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1920 TTGC 1923 |||| Sbjct 165527366 TTGC 165527363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652659521792