Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010812.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-26 seq13 104 4e-19 seq11 89.7 9e-15 >seq16 Length=188620566 Score = 129 bits (142), Expect = 1e-26 Identities = 191/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1719 CTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1778 |||| || |||| ||||| | ||||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1779 TGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATA--CCA 1836 ||||| || |||| |||| | || |||| |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1837 AGCATCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGG 1896 |||| || | | ||| | ||| ||| |||| || ||| | | |||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1897 TCCCAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCTATCACAAT--A 1954 ||||| |||||| ||||||||||| || || || | ||||||||| || | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1955 CTGATGGGTCTCCATGGCCGCGCAGCG 1981 |||| |||||| |||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 209/305 (69%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1685 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1744 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1745 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA- 1803 ||| ||| ||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1804 -GTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACCTTTGGAC 1862 |||| ||| | |||||| |||| ||| || | | || || | | || ||| Sbjct 89851321 TGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1863 --TCAGATCTAGATGACCGCACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATTGT 1920 | || || | |||||| || | || |||||| ||||| ||||| ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1921 TTTACCCGTACGACTATCACCTTCTATCACAAT--ACTGATGGGTCTCCATGGCCGCGCA 1978 |||||| || | ||||| |||||| | || ||| | |||||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCA 89851496 Query 1979 GCGGC 1983 ||||| Sbjct 89851497 GCGGC 89851501 Score = 89.7 bits (98), Expect = 9e-15 Identities = 214/318 (67%), Gaps = 7/318 (2%) Strand=Plus/Plus Query 2273 ACGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCTGTCGAGCTCTTAGCTCCCTGAATG 2332 || || |||||||||| |||||| || ||||| | ||||| ||| ||| Sbjct 172134364 ACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATG 172134423 Query 2333 TTCGGATGGAAATGTGCTGACCTGCTTGGG-GATGTGAGGTCGAAGAATCTGTTGTTTTG 2391 | ||||| || | | ||| | ||||| ||| ||||||| |||||||| ||||| Sbjct 172134424 TATGGATGACAAATTTCAGACGTATTTGGGTGAT-TGAGGTCAAAGAATCTTGGATTTTG 172134482 Query 2392 GCATTTGAATTTTCCTTCGAATTGGATGAGAATGTGCAGGTGAGGAGTCCCATCCTCGTG 2451 ||||||||||| ||| | || || | || || || ||||| | | || ||||| Sbjct 172134483 ACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTG 172134542 Query 2452 CAGTTCTCTGC--AAACCCTAATGAATAATTTAT--TTGTTGGGGTTGCTAGGGCTTTTA 2507 ||||||| ||| | | | || ||| || || || || ||| ||| |||| | Sbjct 172134543 CAGTTCTATGCAGATAGCGATATATATACTTGATCGCTGAAGGAATTGGTAGAACTTTCA 172134602 Query 2508 TTTGGGAAAGTGCTTCTTCTTTGTTTAGGGTGCAGTGTGGGTATGTGAGGAAGTAGTTCT 2567 ||| ||| | ||||||| || ||| | ||||||||||| ||||||||||| Sbjct 172134603 GTTGTTCAAGATAATATTCTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCT 172134662 Query 2568 TTGCATTTATTAAGAAAC 2585 | ||||| | ||||||| Sbjct 172134663 TGGCATTGA-CAAGAAAC 172134679 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 204/303 (67%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 1685 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAC 1744 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1745 TTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA- 1803 ||| || ||||| | | ||| || || || || ||||| ||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1804 -GTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACCTTTGGAC 1862 |||| ||| | |||||| |||| ||| || ||| | || | | || ||| Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1863 TCAGATCTAGATGACCGCACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTT 1922 | | || | |||||| || | || |||||| ||||| ||||| ||||||||||||| Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1923 TACCCGTACGACTATCACCTTCTATCACAAT--ACTGATGGGTCTCCATGGCCGCGCAGC 1980 | | || | || ||||| ||| | | ||| | |||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGC 165527308 Query 1981 GGC 1983 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710258586656