Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010818.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq13 105 1e-19 seq11 100 5e-18 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1671 CCTGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1730 ||||| ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1731 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGTAG 1790 || ||| || ||||| | ||| || || || |||||||| |||| |||| ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1791 TGCGGATCGACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACCTTT--GGGC 1848 || || | |||||| |||| ||| || ||||||| | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1849 TAAGATCTAAATGCCCACATAGATAGTTGTGTGGGCCTAAAGACCTAGCCCACATAGTCT 1908 | || || | ||| ||||||| ||||| ||| || ||||| || |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1909 TCCCAGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTAAGGGGCCGCGCAGC 1966 | || || | ||| | || || | ||| ||||| ||||| | ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAGC 89851498 Query 1967 GGC 1969 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 100 bits (110), Expect = 5e-18 Identities = 204/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1671 CCTGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1730 ||||| ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1731 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGTAG 1790 || || || ||||| | | ||| || || || |||||||| |||| ||| ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1791 TGCGGATCGACGTCATCAATGACGTTATACCATGCGTCGTTACTGTACACCTTTGGGCTA 1850 || || | |||||| |||| ||| || |||| ||| | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1851 AGATCTAAATGCCCACATAGATAGTTGTGTGGGCCTAAAGACCTAGCCCACATAGTCTTC 1910 | || | ||| ||||||| ||||| ||| || ||||| || |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1911 CCAGTACGACTATCTCCCTCAATTACTAT--ACTTTGAGGTCTAAGGGGCCGCGCAGCGG 1968 | || | || || | || | | | ||||| ||||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCGG 165527306 Query 1969 C 1969 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649459573744