Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010833.1 Length=2708 Score E Sequences producing significant alignments: (Bits) Value seq13 134 2e-28 seq11 131 3e-27 seq16 96.9 6e-17 >seq13 Length=197258317 Score = 134 bits (148), Expect = 2e-28 Identities = 252/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1652 CTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCGT 1711 |||| || ||||| || | ||||| ||| || || ||||| | || ||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1712 ATTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTTAGCT 1771 ||||||| || |||||||| | | ||||||||| || || |||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1772 TTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAGAC-- 1829 | | ||| || || || | |||||| |||| ||| || ||| | || ||||| |||| Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1830 CCTGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGAGCCCA 1889 | |||| ||||| || |||| | |||||||| || |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1890 CATTGTCTTGCCTGTTCGACTATCTCCTTCGACTATCA--AACTAACAGGCCTGCTGGGC 1947 |||||| || ||||| | ||| | ||| | || | ||| || || | ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1948 CGCGCAGCGGCATCTCTTCCAAAATAGTCATCGGCCCACTCTTGCATCTCGTCGGGAACG 2007 ||||||||||| | | |||||| || ||| ||||| | ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 2008 TGAGTGAA 2015 | |||||| Sbjct 89851551 TTAGTGAA 89851558 >seq11 Length=168460249 Score = 131 bits (144), Expect = 3e-27 Identities = 252/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1648 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTT 1707 ||| |||| || ||||| |||| ||||| ||| || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1708 CCGTATTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCATCAATTCTTTCCAGTGCTTT 1767 ||||||||||| | |||||||| | ||||||||| || || |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1768 AGCTTTAGGTAGTGCGGAGGGACGTCATCAATGACGTTATATTCAGCCTCATTTGAATAG 1827 || | | ||| || || || | |||||| |||| ||| || ||||| | ||||| || Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1828 ACCCTGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTATGGGCCCCTAAAGCACGAGCC 1887 || | |||| ||||| || |||| | |||||||| || |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1888 CACATTGTCTTGCCTGTTCGACTATCTCCTTCGACTAT--CAAACTAACAGGCCTGCTGG 1945 |||||||| |||| ||| | || |||| | || ||| || || | | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1946 GCCGCGCAGCGGCATCTCTTCCAAAATAGTCATCGGCCCACTCTTGCATCTCGTCGGGAA 2005 ||||||||||||| | | ||||| || ||| ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 2006 CGTGAGTGAA 2015 | | |||||| Sbjct 165527257 CATTAGTGAA 165527248 >seq16 Length=188620566 Score = 96.9 bits (106), Expect = 6e-17 Identities = 224/336 (67%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1688 CTTTAATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCCTTTTGAGCTCCCA 1747 |||| || ||||| || |||| ||| ||||| |||| |||||||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1748 TCAATTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGAGGGACGTCATCAATGACGTTAT 1807 ||||| |||||||| |||| | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACAT------TGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1808 ATTCAGCCTCATTTGAATAGACCCTGGAGTTGAAGTCCAGGTGTCCACTGAGATAGTTAT 1867 |||| | || || || | ||| | | || ||||| | | ||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1868 GGGCCCCTAAAGCACGAGCCCACATTGTCTTGCCTGTTCGACTATCTCCTTCGACTATCA 1927 | || || | | |||||||||||||| || |||| ||| ||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1928 --AACTAACAGGCCTGCTGGGCCGCGCAGCGGCATCTCTTCCAAAATAGTCATCGGCCCA 1985 ||| ||| || || || | |||| || | |||||| ||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1986 CTCTTGCATCTCGTCGGGAACGTGAGTGAATGAGGA 2021 | |||||| | | || |||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8556661080352