Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010835.1 Length=2560 Score E Sequences producing significant alignments: (Bits) Value seq16 141 2e-30 seq13 129 9e-27 seq11 125 1e-25 >seq16 Length=188620566 Score = 141 bits (156), Expect = 2e-30 Identities = 259/378 (69%), Gaps = 10/378 (3%) Strand=Plus/Minus Query 1542 CTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCCAATCTATTTGGGCCCCAA 1601 |||| || ||||| || |||| |||||| || |||| |||||| ||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1602 TCAATTCTTTCCAGTGCTTTAACTTTAAGTAATGCGGAGAGACGTCATCAATGACGTTAT 1661 ||||| |||||||| ||||| | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACAT------TGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1662 ACAGTACATCGTTTGAGTAAACCCTAGAATTGAAATCCAGGTGTCCACTTAGATAGTTAT 1721 | |||||||| ||| ||||| ||| ||| || || | | ||||||| ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1722 GTGGGCCAAGTGCACGCGCCCACATCGTCTTCCCCGTCCGACTATTACCCTCGATGACAA 1781 || || | || | |||||||| ||||| || || | || ||| || || | | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1782 T--ACTTATAGGTCTGATAGGCCGCGCAGCTGCATCCCTTCCAAAATAATCATCAGCCCA 1839 | ||| | ||||| | || || | ||| || | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1840 TTCTTGCATCTCGTCGGGCACGTTAGTGAATGAGGAGAGGGGAAACGGAGGAACCCACGG 1899 || |||||| | | || ||||| ||||| || || | || | ||| ||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATGG 2248982 Query 1900 TGCCGGAGCTTTTTGGAA 1917 ||| | ||| ||| || Sbjct 2248981 AGCCTGTGCTGGTTGAAA 2248964 >seq13 Length=197258317 Score = 129 bits (142), Expect = 9e-27 Identities = 251/368 (68%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 1506 CTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACTGGCTTTCCGT 1565 |||| || ||||| || | ||||| ||| || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1566 ACTTACAATTTGATTGCCAATCTATTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACT 1625 | || || || || ||||||| | ||| || ||||| || ||||||||||| || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CT 89851312 Query 1626 TTAAGTAATGCGGAGAGACGTCATCAATGACGTTATACAGTACATCGTTTGAGTAAAC-- 1683 | ||||| || || | | |||||| |||| ||| || || ||||||||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1684 CCTAGAATTGAAATCCAGGTGTCCACTTAGATAGTTATGTGGGCCAAGTGCACGCGCCCA 1743 | |||| |||| || |||| || ||||||||| || | | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1744 CATCGTCTTCCCCGTCCGACTATTACCCTCGATGACAAT--ACTTATAGGTCTGATAGGC 1801 ||| || || || |||| || || || |||| || ||| | ||||| || ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1802 CGCGCAGCTGCATCCCTTCCAAAATAATCATCAGCCCATTCTTGCATCTCGTCGGGCACG 1861 |||||||| || | |||||| || ||| ||||||| ||||| || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1862 TTAGTGAA 1869 |||||||| Sbjct 89851551 TTAGTGAA 89851558 >seq11 Length=168460249 Score = 125 bits (138), Expect = 1e-25 Identities = 253/372 (68%), Gaps = 14/372 (4%) Strand=Plus/Minus Query 1502 CCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACTGGCTTT 1561 ||| |||| || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1562 CCGTACTTACAATTTGATTGCCAATCTATTTGGGCCCCAATCAATTCTTTCCAGTGCTTT 1621 ||||| || || | || ||||||| | ||| || ||||| || ||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 1622 AACTTTAAGTAATGCGGAGAGACGTCATCAATGACGTTATA--CAGTACATCGTTTGAGT 1679 | | ||||| || || | | |||||| |||| ||| || ||| | | ||||||| Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAG--CGTTGTTTGAGA 165527438 Query 1680 AAACCCTAGAATTGAAATCCAGGTGTCCACTTAGATAGTTATGTGGGCCAAGTGCACGCG 1739 | || | ||| |||| || |||| || ||||||||| || | | | | Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1740 CCCACATCGTCTTCCCCGTCCGACTATTACCCTCGATGACAAT--ACTTATAGGTCTGAT 1797 ||||||| || || | |||| |||||| | |||| | ||| | ||||| || Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCAT 165527320 Query 1798 AGGCCGCGCAGCTGCATCCCTTCCAAAATAATCATCAGCCCATTCTTGCATCTCGTCGGG 1857 ||||||||||| || | ||||| || ||| ||||||||||||| || || || Sbjct 165527319 CGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGG 165527260 Query 1858 CACGTTAGTGAA 1869 || |||||||| Sbjct 165527259 TACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8083068769248