Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010837.1 Length=2666 Score E Sequences producing significant alignments: (Bits) Value seq16 156 7e-35 seq13 127 3e-26 seq11 123 4e-25 >seq16 Length=188620566 Score = 156 bits (172), Expect = 7e-35 Identities = 242/341 (71%), Gaps = 16/341 (5%) Strand=Plus/Minus Query 1633 CTTTAATTTGAACTGGTTTACCGTATTTACAATTTGACTGCCAGTCCTTCTGGGCCCCAA 1692 |||| || ||||| ||||| | ||| || || |||| |||||||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1693 TTAACTCTTTCCAGTGTTTCATCTTTAAATATTTGGGGTCCACGTCATCAATAATATTGT 1752 ||| || ||||||||||| |||| ||| |||| |||| |||||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1753 AGTGTGCTTCGTTGGAATAGCACTTAGGGTTAAAGTCTAGGTGACCACTTAAATAATTGT 1812 | | | ||||| || | | |||| || ||||||| | ||||||||||||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1813 GGACCCCTAAAGCACCGGCCCACATCGTCTTCCCTGTTCGAGAATCACCTTCAATTATTA 1872 | || || | | |||||||| ||||| || |||| ||||||||||||||||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1873 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGCACT-TC--TTCCGAAATAATCGTCCGC 1927 | ||| ||||||| || || | |||| || || | |||||||| || || Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCG---CTGTCGGATGAAAAATAATCATCTGC 2249045 Query 1928 CCAAGCTTGCATCTCTTCTGGCACGTTAGTGAATGATGACA 1968 ||| |||||| ||| ||| ||||| ||||| || |||| Sbjct 2249044 CCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACA 2249004 >seq13 Length=197258317 Score = 127 bits (140), Expect = 3e-26 Identities = 272/399 (68%), Gaps = 18/399 (5%) Strand=Plus/Plus Query 1599 CCAGGATTGCAAAGCACGATGCATGGGATGCCCCCTTTAATTTGAACTGGTTTACCGTAT 1658 || || ||||| || | ||| ||| ||||| ||||| | || ||| || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1659 TTACAATTTGACTGCCAGTCCTTCTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTT 1718 || || || |||||||| | | || || ||||| |||||||||||||| ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CTTG 89851314 Query 1719 AAATATT-TGG-GGTCCACGTCATCAATAATATTGTAGTGTGCTTCGTTGGAATAGCACT 1776 || |||| ||| ||| | |||||| || || ||||| | | ||||| || || ||| Sbjct 89851315 AAGTATTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAG-ACT 89851371 Query 1777 TAGGGTTA---AAGTCTAGGTGACCACTTAAATAATTGTGGACCCCTAAAGCACCGGCCC 1833 | || | ||| | ||||||| || || || || || |||| | |||| Sbjct 89851372 TTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCC 89851431 Query 1834 ACATCGTCTTCCCTGTTCGAGAATCACCTTCAATTATTAT--ACTAATAGGTCTCTCCGG 1891 |||| || || ||||| | ||||||| ||| || ||||| ||| | |||||| ||| Sbjct 89851432 ACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGG 89851489 Query 1892 CCGCGCAGCGGCACTTCTTCCGAAATAATCGTCCGCCCAAGCTTGCATCTCTTCTGGCAC 1951 |||||||||||| | ||| || || || ||||| ||||| |||||||| || Sbjct 89851490 CCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTAC 89851549 Query 1952 GTTAGTGAATGATGACAGTGGAAACGGAGGAACCCATGG 1990 |||||||| ||| | ||| || ||| ||| |||| Sbjct 89851550 ATTAGTGAAGCTTGATAATGGGAATGGACTTACCTATGG 89851588 >seq11 Length=168460249 Score = 123 bits (136), Expect = 4e-25 Identities = 274/404 (68%), Gaps = 18/404 (4%) Strand=Plus/Minus Query 1593 CCCTCGCCAGGATTGCAAAGCACGATGCATGGGATGCCCCCTTTAATTTGAACTGGTTTA 1652 ||| | || || ||||| |||| ||| ||| ||||| ||||| | || ||| || Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1653 CCGTATTTACAATTTGACTGCCAGTCCTTC--TGGGCCCCAATTAACTCTTTCCAGTGTT 1710 |||||||| || | |||||||| | ||| || || ||||| |||||||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTG-- 165527494 Query 1711 TCATCTTTAAATATT-TGG-GGTCCACGTCATCAATAATATTGTAGTGTGCTTCGTTGGA 1768 | | || |||| ||| ||| | |||||| || || ||||||| || | ||| || Sbjct 165527493 ----CATGAAGTATTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGA 165527440 Query 1769 ATAGCACTTAGGGTTAAAGTCTAGGTGACCACTTAAATAATTGTGGACCCCTAAAGCACC 1828 || || ||| ||| | ||||||| || || || || || |||| | Sbjct 165527439 GAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCT 165527380 Query 1829 GGCCCACATCGTCTTCCCTGTTCGAGAATCACCTTCAATTATTAT--ACTAATAGGTCTC 1886 |||||||| || || | ||| | |||| ||||| || ||| | ||| | |||||| Sbjct 165527379 TGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTC 165527322 Query 1887 TCCGGCCGCGCAGCGGCACTTCTTCCGAAATAATCGTCCGCCCAAGCTTGCATCTCTTCT 1946 ||||||||||||||| | || || || || ||||| |||||| |||||| Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 1947 GGCACGTTAGTGAATGATGACAGTGGAAACGGAGGAACCCATGG 1990 || || |||||||| ||| | || || ||| |||||||| Sbjct 165527261 GGTACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGG 165527218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8422263262336