Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010946.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-22 seq13 86.0 1e-13 seq11 77.0 6e-11 >seq16 Length=188620566 Score = 113 bits (124), Expect = 8e-22 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 1700 CTTTAATTTGAATTGGCTTTCCGTACTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1758 |||| || |||| || |||| |||||| | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1759 ATGAATTCTTTGAAATGCTTTAAATAGTGGGGGTCGACGTCATCAATGACGTTGTA--CC 1816 | ||||| || | || |||||| | || |||| |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1817 ATGCATCGTTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTG 1876 | ||||||| | | ||| | ||| ||| |||| || ||| | | |||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1877 GGCCCAATGAACGAGCCCACATTGTCCTTCCTGT 1910 |||||||| | |||||||||||| |||| || Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq13 Length=197258317 Score = 86.0 bits (94), Expect = 1e-13 Identities = 205/305 (67%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1665 TCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCGTA 1724 |||||| |||||||| | |||||| || || || ||||| | || ||||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1725 CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCTTTAAATA 1784 || ||| ||||| | ||| || || || || ||||| | ||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1785 --GTGGGGGTCGACGTCATCAATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGA 1842 |||| ||| | |||||| |||| |||||| | ||||| | | || ||| Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1843 C--TCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAATGAACGAGCCCACATTG 1900 | || || | |||||| || | || |||||| ||||| || | |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1901 TCCTTCCTGTACGACTCTCACCCTCTATGACAAT--ACTTATGGGTCTATTTGGCCGCGC 1958 | | ||||| | |||| ||||||| || ||| | ||||| | |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGC 89851495 Query 1959 AGCGG 1963 ||||| Sbjct 89851496 AGCGG 89851500 >seq11 Length=168460249 Score = 77.0 bits (84), Expect = 6e-11 Identities = 201/303 (66%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 1665 TCCTGGATTGCATAGGAAGATTGTCGGGATACCACCTTTAATTTGAATTGGCTTTCCGTA 1724 |||||| |||||||| | |||||| || || || ||||| | || ||||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1725 CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGCTTTAAATA 1784 || || ||||| | | ||| || || || || ||||| | ||| | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1785 --GTGGGGGTCGACGTCATCAATGACGTTGTACCATGCATCGTTGCTGTACACCTTTGGA 1842 |||| ||| | |||||| |||| |||||| || | ||| | | || ||| Sbjct 165527484 TTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1843 CTCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAATGAACGAGCCCACATTGTC 1902 | | || | |||||| || | || |||||| ||||| || | ||||||||||| Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1903 CTTCCTGTACGACTCTCACCCTCTATGACAAT--ACTTATGGGTCTATTTGGCCGCGCAG 1960 | | ||| | | ||| | ||||| | ||| | ||||| | |||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAG 165527309 Query 1961 CGG 1963 ||| Sbjct 165527308 CGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607860249120