Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010947.1 Length=2755 Score E Sequences producing significant alignments: (Bits) Value seq13 78.8 2e-11 >seq13 Length=197258317 Score = 78.8 bits (86), Expect = 2e-11 Identities = 205/306 (67%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1685 TCCTGGATTGCAGAGGAAGATTGTAGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTA 1744 |||||| ||||| || | |||||| || || || ||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1745 CTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1804 || ||| ||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1805 --GTGGGGGTCGACATCATCAATGACGTTGTACCACGCGTCATTTGAATAAACCTTAGGG 1862 |||| ||| | ||||| |||| |||||| |||| ||||| | || || Sbjct 89851320 TTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCT 89851377 Query 1863 -CTTAAG-TCCAGGTGACCACACAAATAATTGTGTGGACCTAACGACCTAGCCCACATGG 1920 ||| || |||| |||||||| | || || ||| || || || || |||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1921 TCTTGCCGGTACGACTATCGCCCTCTATTACAAT--ACTAATCGGTCTCCAAGGCCGCGC 1978 | || || || | ||| | ||||| | || ||| | |||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGC 89851495 Query 1979 AGCGGC 1984 |||||| Sbjct 89851496 AGCGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8707058638608