Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010949.1 Length=2561 Score E Sequences producing significant alignments: (Bits) Value seq13 122 1e-24 seq11 105 1e-19 >seq13 Length=197258317 Score = 122 bits (134), Expect = 1e-24 Identities = 250/369 (68%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 1500 CTCCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTCCCGT 1559 ||||||| ||||| || | ||||| ||| || |||||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1560 ATTTGCAGTTGCTTTGCCAGTCACGTTGGGCCCCAATGAGCTCTTTCCAATGTTTTAGCT 1619 |||||||||| ||||| | |||| || ||||| | ||||||||| | ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1620 TTAGGTATTGCGGAGTGACATCATCAATGACGTTATAATGCACCTCATTTGAATAAAC-- 1677 | | |||||| || | | ||||| |||| ||| |||| || || ||||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1678 CCTAGAATTAAAATCTAGATGTCCACTCAGATAATTATGTGGGCCTAATGCACGAGCCCA 1737 | || | || | ||| |||| | || |||||| || || | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1738 CATCGTCTTTCCTGTACGACTATCACCCTCAATTATAAT--ACTAATAGGTCTCTCCGGC 1795 ||| || || ||||| | ||||| || || || || ||| | |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1796 CGCGCAGCGGCACCCCTTCCGAAATATTCGTCAGCCCACTCTTGCATCTCGTCAGGAACA 1855 ||||||||||| ||| || ||| || ||||| | ||||| || || || ||| Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1856 TTAGTGAAG 1864 ||||||||| Sbjct 89851551 TTAGTGAAG 89851559 >seq11 Length=168460249 Score = 105 bits (116), Expect = 1e-19 Identities = 247/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 1496 CCCTCTCCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTC 1555 ||| ||||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1556 CCGTATTTGCAGTTGCTTTGCCAGTCACGTTGGGCCCCAATGAGCTCTTTCCAATGTTTT 1615 ||||||||||||| ||||| | ||||| || ||||| | ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1616 AGCTTTAGGTATTGCGGAGTGACATCATCAATGACGTTATAATGCACCTCATTTGAATAA 1675 || | | |||||| || | | ||||| |||| ||| || | | | ||||| | Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1676 ACCCTAGAATTAAAATCTAGATGTCCACTCAGATAATTATGTGGGCCTAATGCACGAGCC 1735 || | || || | ||| |||| | || |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1736 CACATCGTCTTTCCTGTACGACTATCACCCTCAATTATAAT--ACTAATAGGTCTCTCCG 1793 ||||| || || | ||| | || ||| | || || | ||| | |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1794 GCCGCGCAGCGGCACCCCTTCCGAAATATTCGTCAGCCCACTCTTGCATCTCGTCAGGAA 1853 ||||||||||||| || || ||| || ||||| ||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1854 CATTAGTGAAG 1864 ||||||||||| Sbjct 165527257 CATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8086268717296