Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010952.1 Length=2605 Score E Sequences producing significant alignments: (Bits) Value seq16 158 2e-35 seq13 154 2e-34 seq11 141 2e-30 >seq16 Length=188620566 Score = 158 bits (174), Expect = 2e-35 Identities = 276/395 (70%), Gaps = 20/395 (5%) Strand=Plus/Minus Query 1581 CTTTAATTTGGACTGGCTTCCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGA 1640 |||| || || || || || | ||| ||||| |||| ||||||||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1641 CAAGTTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGTGCAACGTCATCAATGACGTTAT 1700 | ||| |||||||| |||| | | ||| | | ||||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTT--AACGTTATCAATAACGTTAT 2249220 Query 1701 AATCCACCTCGTTCGAGAACACTCTTGGATTGAAGTCCAGATGTCCACTTAGGTAATTGT 1760 | ||||| ||||| ||||| || | ||||| ||||| | || ||||||| ||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1761 GTGGGCCTGAGGCACGAGCCCACATCGTCTTCCCTGTTCTCGAATCACCTTCCACTATGA 1820 || || | | | |||||||| ||||| || ||||| ||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1821 T--ACTCATCGGTCTCTCTGGCCGCGCAGCGGAACCTCTC----CCAAAATAATCGTCAG 1874 | ||| | |||||| ||| || | |||| || || ||||||||| || | Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 1875 CCCACTCTTGCATCTCGTCAGGAACGTTAGTGAAAGAGGAGAGGGGAAACGGAGGAGCCC 1934 |||| | |||||| | | || ||||| |||||||| || | || | ||| ||| Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCC 2248986 Query 1935 ATGGTTCCGGATCCTTCATGAAAATCC-TATCCAG 1968 |||| || | | || |||||| || ||||||| Sbjct 2248985 ATGGAGCCTG-TGCTGGTTGAAAAACCGTATCCAG 2248952 >seq13 Length=197258317 Score = 154 bits (170), Expect = 2e-34 Identities = 253/364 (70%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 1547 CCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGGACTGGCTTCCCGTAT 1606 || || ||||| || | ||||| ||| || || ||||| | | |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1607 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGACAAGTTCTTTCCAGTGCTTTAGCTTT 1666 ||||| || |||||||| | || ||| || || | || |||||||||| |||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCTTG 89851314 Query 1667 AGGTAGTGCGGTGCAACGTCATCAATGACGTTATAATCCACCTCGTTCGAGAACACTCTT 1726 | ||| || |||| | |||||| |||| ||| ||||| || ||||| ||||| ||| || Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1727 --GGATTGAAGTCCAGATGTCCACTTAGGTAATTGTGTGGGCCTGAGGCACGAGCCCACA 1784 |||| ||||| ||| |||| || ||| || ||| || | | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1785 TCGTCTTCCCTGTTCTCGAATCACCTTCCACTATGATACTCATCGGTCTCTCTGGCCGCG 1844 | || || ||||| || ||||||| ||| | || || | | |||||| ||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1845 CAGCGGAACCTCTCCCAAAATAATCGTCAGCCCACTCTTGCATCTCGTCAGGAACGTTAG 1904 |||||| | ||||| || || ||||| | ||||| || || || || |||| Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTAG 89851554 Query 1905 TGAA 1908 |||| Sbjct 89851555 TGAA 89851558 Score = 113 bits (124), Expect = 7e-22 Identities = 238/347 (69%), Gaps = 15/347 (4%) Strand=Plus/Plus Query 1662 GCTTTAGGTAGTGCGGTGCAACGTCATCAATGACGTTATAATCCACCTCGTTCGAGAACA 1721 |||| | ||| || |||| | |||||| |||| ||| || || | | ||| ||||| | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1722 CTCTTGGATTGAAGTCCAGATGTCCACTTAGGTAATTGTGTGGGCCTGAGGCACGAGCCC 1781 || || |||| ||||| || |||| || ||| || ||| || || | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1782 ACATCGTCTTCCCTGTTCTCGAATCACCTTCCACTATGAT-ACTCA--TCGGTCTCTCTG 1838 |||| || || |||||||| |||| |||||| |||||| ||| | | |||||| | | Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTC---TATGATTACTGACTTTGGTCTCACCG 172134058 Query 1839 GCCGCGCAGCGGAACCTCTCCCAAAATAATCGTCAGCCCACTCTTGCATCTCGTCAGGAA 1898 |||| ||||||| | | ||||| || || ||||| ||||||| || || | | Sbjct 172134059 GCCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTA 172134118 Query 1899 CGTTAGTGAAAGAGGAGAGGGGAAACGGAGGAGCCCATGGTTCCGGA--TCCTTCATGAA 1956 | |||||||| || | || || ||| ||||||| | | | | ||||| | Sbjct 172134119 CATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCAT--A 172134176 Query 1957 AATCCTATCCAGGTT--ACTGGATAGGTTGTGATACTGAAAGAGAAA 2001 | ||||||||||| | | ||| |||||||| ||| |||||||| Sbjct 172134177 GACTCTATCCAGGTTGAAGTTGAT--GTTGTGATGCTGTAAGAGAAA 172134221 >seq11 Length=168460249 Score = 141 bits (156), Expect = 2e-30 Identities = 317/471 (67%), Gaps = 24/471 (5%) Strand=Plus/Minus Query 1540 ACCCTCACCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGGACTGGCTT 1599 |||| | || || ||||| |||| ||||| ||| || || ||||| | | |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1600 CCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGACAAGTTCTTTCCAGTGCTT 1659 ||||||||||| | |||||||| | | ||| || || | || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1660 TAGCTTTAGGTAGTGCGGTGCAACGTCATCAATGACGTTATAATCCACCTCGTTCGAGAA 1719 | ||| || |||| | |||||| |||| ||| || || | | ||| ||||| Sbjct 165527490 GAA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1720 CACTCTTGGATTGAAGTCCAGATGTCCACTTAGGTAATTGTGTGGGCCTGAGGCACGAGC 1779 ||| || ||| ||||| ||| |||| || ||| || ||| || | | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1780 CCACATCGTCTTCCCTGTTCTCGAATCACCTTCCACTATGATACT---CATCGGTCTCTC 1836 |||||| || || | ||| || |||| ||||| |||||| | | | |||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTT---TATGATTGTTGACTTTGGTCTCAT 165527320 Query 1837 TGGCCGCGCAGCGGAACCTCTCCCAAAATAATCGTCAGCCCACTCTTGCATCTCGTCAGG 1896 ||||||||||||| | ||||| || || ||||| ||||||| || || || Sbjct 165527319 CGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGG 165527260 Query 1897 AACGTTAGTGAAAGAGGAGAGGGGAAACGGAGGAGCCCATGG----TTCCGGATCCTTCA 1952 || |||||||| || | || || ||| ||||||| | |||| |||| Sbjct 165527259 TACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGAT--TTCA 165527202 Query 1953 TGAAAATCCTATCCAGGT--TACTGGATAGGTTGTGATACTGAAAGAGAAA 2001 | | | |||||||||| || | ||| |||||||| ||| || ||||| Sbjct 165527201 T--AGACTCTATCCAGGTTGTAGTTGAT--GTTGTGATGCTGTAACAGAAA 165527155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8227066431408