Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011024.1 Length=2771 Score E Sequences producing significant alignments: (Bits) Value seq13 105 1e-19 seq11 105 1e-19 seq16 87.8 3e-14 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1702 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCATAC 1761 ||||| ||||| || | ||| || || ||||||||||| | || | ||||| | || Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1762 TTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAAATAA 1821 ||| ||| |||||| | | ||| || || ||||||||||| ||||||| || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1822 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTT--TGAC 1879 || || | |||||| |||| ||| || | | | || | | |||||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1880 TGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAAGGAACGGGCCCACATGGTCT 1939 ||||||| | ||| || || | || |||||| || || || | |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1940 TTCCTGTCCGGCTGTCACCCTCAATCACTAT--ACTTACCGGTCTCCAAGGCCGCGCAGC 1997 | ||||||| | |||| || || | ||| |||| |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAGC 89851498 Query 1998 GGC 2000 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 105 bits (116), Expect = 1e-19 Identities = 205/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1702 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTCCCATAC 1761 ||||| ||||| || | ||| || || ||||||||||| | || | ||||| || || Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1762 TTGGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAAATAA 1821 ||| || |||||| | || ||| || || ||||||||||| ||||| | || || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1822 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTG 1881 || || | |||||| |||| ||| || ||| || || | | ||||||| || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1882 AGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAAGGAACGGGCCCACATGGTCTTT 1941 |||| | ||| || || | || |||||| || || || | |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1942 CCTGTCCGGCTGTCACCCTCAATCACTAT--ACTTACCGGTCTCCAAGGCCGCGCAGCGG 1999 | ||||| | | ||| | || | | | |||| |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCGG 165527306 Query 2000 C 2000 | Sbjct 165527305 C 165527305 >seq16 Length=188620566 Score = 87.8 bits (96), Expect = 3e-14 Identities = 184/268 (69%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1736 CTTTAATTTGAATGGGCTTCCCATACTTGGTGTT-GCTCTGCCAGTCTCTTTGGGCCCCC 1794 |||| || |||| || || | |||||| || ||| |||||||||||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCT-TGCCAGTCTCTTTGTGCACCA 2249275 Query 1795 ATAAACTCTTTAAAGTGCTTTAAATAATGCGGGTCGACGTCATCAATGACGTTATA--CC 1852 | || || || |||| |||||| | || |||| |||| |||||| |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1853 AAGCATTATTGCTGTATACTTTTTGACTGAGGTCAAGATGGCCGCACAAATAATTATGTG 1912 | ||| || | | || | || | | ||| | || || | |||||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1913 GGCCTAAGGAACGGGCCCACATGGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTAT-- 1970 || || || | |||||||| |||||||| || | ||||| ||||| | ||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1971 ACTTACCGGTCTCCAAGGCCGCGCAGCG 1998 ||| | |||||| | || || | |||| Sbjct 2249096 ACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8755053678720