Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011052.2 Length=2780 Score E Sequences producing significant alignments: (Bits) Value seq11 80.6 5e-12 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 5e-12 Identities = 203/305 (67%), Gaps = 8/305 (3%) Strand=Plus/Minus Query 1702 CTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTTCCGT 1761 ||||||| ||||| || | ||| || ||||| || ||||| | || |||||| |||| Sbjct 165527605 CTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGT 165527546 Query 1762 ATTTACAATTGCTTTGCCAGTCTTTCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGT 1821 |||| || | ||||| | | || || || || |||||||| ||||| | | || Sbjct 165527545 ATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1822 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACCTTTGGAC 1881 |||| || | |||||| |||| ||| || ||| |||| | || ||| Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1882 TCAAGTCCAAATGCCCACACAGATAATTATGTGGGCCTAAGGATCTAGCCCAAACTGTTT 1941 | ||||| ||| ||||| | || |||||| || || ||||| ||||| | ||||| Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1942 TACCCATTCT--ACTTGGGCCTTCTATAACTAT--ACTTATGGGCCTCTCTGGCCGCGCA 1997 | | | || | || |||| ||| | | | |||| || ||| ||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTA--CCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCA 165527310 Query 1998 GCGGC 2002 ||||| Sbjct 165527309 GCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8783853197400