Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011096.1 Length=2794 Score E Sequences producing significant alignments: (Bits) Value seq16 123 4e-25 seq13 87.8 3e-14 seq11 82.4 1e-12 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 192/268 (72%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1754 CTTTAATTTGAATGGGCTTCCCGTACTT-CGTGTTGCTTTGCCAGTCTCTTTGGGCCCCC 1812 |||| || |||| || || | |||||| | |||||| ||||||||||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1813 ATGAACTCTTTAAAGTGTTTGAGATAGTGGGGATCGACGTCATCAATGACGTTATA--CC 1870 | || || || ||||||| | | | || || | |||| |||||| |||||||| || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1871 AAGCATCATTTGAATACACCTTTGGACTCAGGTCTAGATGCCCACACAAATAATTGTGTG 1930 | |||| || || | ||| | ||| ||| ||||| || |||| |||||||| ||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1931 GACCTAGTGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACCTTCAATAACTAT-- 1988 || | ||| || |||||||||||||| || || | |||||||||||| | ||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1989 ACTAATCGGTCTCCAAGGCCGCGCAGCG 2016 ||| | |||||| | || || | |||| Sbjct 2249096 ACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 203/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1720 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAC 1779 ||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1780 TTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGATAG 1839 || ||| ||||| | | ||| || || || |||||||| |||| |||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1840 TGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGAC-- 1897 || || | |||||| |||| ||| || | | || ||||| | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1898 TCAGGTCTAGATGCCCACACAAATAATTGTGTGGACCTAGTGACCTGGCCCACATTGTCT 1957 | ||||| | ||| ||||| | || || ||| || | || || ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1958 TGCCTGTACGACTATCACCTTCAATAACTAT--ACTAATCGGTCTCCAAGGCCGCGCAGC 2015 | ||||| | ||||| ||| || | ||| ||| | |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGC 89851498 Query 2016 GGC 2018 ||| Sbjct 89851499 GGC 89851501 Score = 84.2 bits (92), Expect = 4e-13 Identities = 229/348 (66%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 2265 TCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCAAGGGTGTCTCCGTCTTTATC 2324 ||| | |||| ||||| |||||||| ||||| || | || |||||||| | Sbjct 172134321 TCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTG 172134380 Query 2325 GATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGC 2384 || || |||| | | ||||||||||| ||| |||| |||||| || | | Sbjct 172134381 CATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTC 172134440 Query 2385 TGACCTGGTTGGG-GATACCAAGTCGAAGAATCTGTTATTTGTGCACTGGTATTTGCCTT 2443 ||| | ||||| ||| | ||| |||||||| |||| || | | |||| || Sbjct 172134441 AGACGTATTTGGGTGAT-TGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTT 172134499 Query 2444 CGAACTGGAGAAGCACGTGGAGATGAGGCTCGCCATTTTCGTGTAGCTCTTTGCAGAT-- 2501 | | ||| | | || || |||||||||| | | | |||||| || ||| ||||||| Sbjct 172134500 CCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAG 172134559 Query 2502 --TTTGATGTACTTCTTATTTGTTGGGGTGTCTAGACCTTGAAGTTGTTGGAGAGTTTCC 2559 | || ||||| | || || | |||| ||| ||||||| ||| | Sbjct 172134560 CGATATATATACTTGATCGCTGAAGGAATTGGTAGAACTTTCAGTTGTTCAAGATAATAT 172134619 Query 2560 TCTTTTGATAGAGAGCATTTAGGATATGTGAGAAAGAAATTCTTGGCA 2607 ||||| |||| | ||||||| || ||||||| ||| | ||||||||| Sbjct 172134620 TCTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCA 172134667 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 200/301 (66%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1720 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTAC 1779 ||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1780 TTCGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGATAG 1839 || || ||||| | || ||| || || || |||||||| |||| ||| || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1840 TGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTTGAATACACCTTTGGACTC 1899 || || | |||||| |||| ||| || ||| | ||||| | || ||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1900 AGGTCTAGATGCCCACACAAATAATTGTGTGGACCTAGTGACCTGGCCCACATTGTCTTG 1959 |||| | ||| ||||| | || || ||| || | || || ||||||||||| ||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1960 CCTGTACGACTATCACCTTCAATAACTAT--ACTAATCGGTCTCCAAGGCCGCGCAGCGG 2017 | ||| | || ||||| || | | | ||| | |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 2018 C 2018 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8828652448680