Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011135.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-17 seq11 96.9 6e-17 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 208/305 (68%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1696 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1755 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1756 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGAT 1814 |||| | || || ||||| | ||| || || || || ||||| ||||||| | | Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1815 AGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATTACTGTAGACCTTTGGAC 1874 | || || || |||||| |||| ||| || | || || | |||| ||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1875 --TAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATAGT 1932 | ||||| | ||||||||| | || |||||| ||||| ||||| |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1933 CTTTCCCGTACTACTATCACCCCTCATGACTAT--ACTTACAGGTCTCAAAGGCCGCGCA 1990 || || || || ||||| |||| ||| |||| ||||||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1991 GCGGC 1995 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 206/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 1696 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1755 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1756 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGAT 1814 |||| | | || ||||| | | ||| || || || || ||||| ||||| | | | Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1815 AGTGGGGGTCTACGTCATCAATGACGTTATACCAGGCATCATTACTGTAGACCTTTGGAC 1874 | || || || |||||| |||| ||| || || | || | |||| ||| Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1875 TAAGGTCTAAATGACCACACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATAGTCT 1934 | |||| | ||||||||| | || |||||| ||||| ||||| |||||||| || | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1935 TTCCCGTACTACTATCACCCCTCATGACTAT--ACTTACAGGTCTCAAAGGCCGCGCAGC 1992 | | || || || ||| | |||| | | |||| ||||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308 Query 1993 GGC 1995 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8742253892640