Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011181.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq16 199 7e-48 seq13 188 1e-44 seq11 167 4e-38 seq9 78.8 2e-11 >seq16 Length=188620566 Score = 199 bits (220), Expect = 7e-48 Identities = 247/338 (73%), Gaps = 14/338 (4%) Strand=Plus/Minus Query 1651 CTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAA 1710 |||| || ||||| || |||| ||| ||||| |||| ||||||||| |||| ||||||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1711 TCAATTCCTTCCAGTGCTTTAACTTTAGATATTGCGGTGTGACATCGTCAATGACGTTGT 1770 |||||||||||||| ||||| | |||| || | || | ||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1771 ATTCCACTTCGTTCGAGTAAACCTTAGAATTGAAGTCCAGATGACCACTCAAGTAATTAT 1830 ||||||| ||||| ||| ||||| ||| ||| ||||| | || |||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1831 GTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATCA 1890 || || || | | |||||||| ||||| || || |||||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1891 AACTCATAGGTCTGAATGGCCGCGCAGCGGAACCTCTC----CCAAAATATTCATCGGCC 1946 | |||||| ||||| || | |||| || || |||||| ||||| ||| Sbjct 2249099 TTGACTGAGGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTGCC 2249044 Query 1947 CACTCTTGCATCTCGTCGGGAACGTTAGTGAAGGAGGA 1984 || | |||||| | | || ||||| ||||| || || Sbjct 2249043 CATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 188 bits (208), Expect = 1e-44 Identities = 318/460 (69%), Gaps = 18/460 (4%) Strand=Plus/Plus Query 1527 AGGAAGATGAATTTAGCATTGTGGAGTGTCCACGATTTCAGAGC-----TGCATTTTCCT 1581 ||||||||||| ||||||| | ||| |||||| |||||||| | ||||| | Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAGACCCAACATGCATGGT--- 89851167 Query 1582 CCTTGTCTAGGAAGTCTTTATAGCTAGCCCCCTCTCCAGGATTGCACAGCACGATTGATG 1641 |||| | | || ||| | || |||| || ||||| || | ||||| || Sbjct 89851168 --TTGTTCAAGTGATCCCAATATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTG 89851225 Query 1642 GGATGCCACCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTT 1701 | ||||| ||||| | || |||||| |||||||||| || |||||||| | || || Sbjct 89851226 GTATGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTT 89851285 Query 1702 GAGCACCAATCAATTCCTTCCAGTGCTTTAACTTTAGATATTGCGGTGTGACATCGTCAA 1761 |||| ||||| || || ||||||||||| || ||||| |||| | || || | Sbjct 89851286 GAGCTCCAATAAACTCTTTCCAGTGCTTGAA------GTATTGTGGTGGTATGTCATCGA 89851339 Query 1762 TGACGTTGTATTCCACTTCGTTCGAGTAAAC--CTTAGAATTGAAGTCCAGATGACCACT 1819 ||| |||||| || || ||||| ||| | || || |||| ||||| |||||||| Sbjct 89851340 TGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACA 89851399 Query 1820 CAAGTAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTTGAATCACC 1879 | ||| |||||| || || | | |||||||| || || |||||||| ||||||| Sbjct 89851400 TACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACT 89851459 Query 1880 TTCGACTATCAAACTCATAGGTCTGAATGGCCGCGCAGCGGAACCTCTCCCAAAATATTC 1939 ||| | || | | | ||||| | ||||||||||||| | ||||| ||| Sbjct 89851460 TTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGA 89851519 Query 1940 ATCGGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAAG 1979 ||| ||||| | ||||| || || || || ||||||||| Sbjct 89851520 ATCTGCCCATTATTGCAGGTCTTCTGGTACATTAGTGAAG 89851559 >seq11 Length=168460249 Score = 167 bits (184), Expect = 4e-38 Identities = 258/369 (70%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 1611 CCCTCTCCAGGATTGCACAGCACGATTGATGGGATGCCACCTTTAATTTGAACTGGCTTT 1670 ||| |||| || ||||| |||| ||||| ||| ||||| ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1671 CCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTT 1730 ||||||||||| | |||||||| | | |||||| ||||| || || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1731 AACTTTAGATATTGCGGTGTGACATCGTCAATGACGTTGTATTCCACTTCGTTCGAGTAA 1790 || ||||| |||| | || || |||| |||||| || | | ||| ||| | Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1791 ACCTTAGAATTGAAGTCCAGATGACCACTCAAGTAATTATGTGGGCCTAACGCACGAGCC 1850 || || ||| ||||| |||||||| | ||| |||||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1851 CACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCTGAATGGC 1910 ||||| || || | |||||| |||| ||||| | || | | ||||| | ||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGC 165527316 Query 1911 CGCGCAGCGGAACCTCTCCCAAAATATTCATCGGCCCACTCTTGCATCTCGTCGGGAACG 1970 |||||||||| | ||||| ||| ||| ||||| ||||||| || || || || Sbjct 165527315 CGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACA 165527256 Query 1971 TTAGTGAAG 1979 ||||||||| Sbjct 165527255 TTAGTGAAG 165527247 Score = 87.8 bits (96), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 1195 GTCCAGACTTGGAAGTTGAGGTAGGCCTTGTGGAGACCCAA-TGCTCTCCTGAGGTTGTG 1253 |||| | || |||||| ||||| |||||||| ||| ||| |||| || | ||||||| Sbjct 165517307 GTCCGTATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGGTGCTTTCTT-AGGTTGTT 165517249 Query 1254 GTTGAACCTTATCTGTATGTGG-TATATTCTGGTTC--TCGTGTACGGTAGATCCTCTAG 1310 |||||||| |||||| | | | | || || | ||| || | |||| | | | | Sbjct 165517248 GTTGAACCGTATCTGCAGCTCGATGTAGTCCGTTTCCATCATACACGGACGTTGCAGGTG 165517189 Query 1311 GTTGTATATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATATAGACGCCATTCTCTGT 1370 || | || |||||| ||||| ||||| | | ||| | | || || ||||| | | Sbjct 165517188 CTTCTTTACCTTGAAGTAGAGAGGATTGGATATCTCGGATAAGTAAACTCCATTTTGGGC 165517129 Query 1371 CTGAGGTGCAGTTATGAATTCCCCGGTGCGTGAATCCATGGCC 1413 ||| ||||||| || || | || |||||| ||||||||||| Sbjct 165517128 TTGATGTGCAGTAATTAACTTGCCTGTGCGTAAATCCATGGCC 165517086 >seq9 Length=209865144 Score = 78.8 bits (86), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 1195 GTCCAGACTTGGAAGTTGAGGTAGGCCTTGTGGAGACCCAA-TGCTCTCCTGAGGTTGTG 1253 ||||| | || |||||| ||||| |||||||| ||| ||| |||| || | |||||| Sbjct 1759649 GTCCATATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGCTGCTTTC-TCAGGTTGCT 1759707 Query 1254 GTTGAACCTTATCTGTA-TGTGGTATATTCTGGTTC--TCGTGTACGGTAGATCCTCTAG 1310 |||||||| ||| || | | || | || || | || || | ||||| | | | | Sbjct 1759708 GTTGAACCGTATTTGCAGTTTGATGTAGTCCGTGTCCATCATACACGGTCGTTGCAGGTG 1759767 Query 1311 GTTGTATATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATATAGACGCCATTCTCTGT 1370 || | | ||||| ||||| ||||||| | | | ||| || || ||||| | | Sbjct 1759768 CTTCTTGACTTTGAAGTAGAGAGGATTTGATATCCCGTAGAAGTAAACTCCATTTTGGGC 1759827 Query 1371 CTGAGGTGCAGTTATGAATTCCCCGGTGCGTGAATCCATGGCC 1413 || ||||||| || || | ||||||| | ||||||||||| Sbjct 1759828 TTGCTGTGCAGTGATTAACTTGCCGGTGCATAAATCCATGGCC 1759870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8403063574048