Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011309.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq13 104 4e-19 seq16 95.1 2e-16 seq11 89.7 9e-15 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 204/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1691 CCAGGATTGCAGAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAACGGGCTTTCCATAC 1750 || || ||||| || | |||||| || ||||| ||||| | || ||||| | || Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1751 TTGGTGTTACTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGAAGTGCTTGAGATAA 1810 ||| |||| ||||| | | || || || ||||| || || ||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1811 TGCGGATCAACATCATCAATGACGTTATACCATACGTCATTACTATAGACTCTTGGAC-- 1868 || || | ||||| |||| ||| || ||||| || ||||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1869 TGAGATCCAAGTGACCGCATAAATAGTTGTGTGAACCCAATGACCTGGCCCACAGTGTTT 1928 |||| |||| ||||| |||| ||||| ||| ||||| || || ||||||| ||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1929 TACCAGTACGACTATTACCCTCTATGACTATACTCATGGGTCTCAAAGGCCGCGCAGCGG 1988 |||| || | || || ||||||| ||| | | ||||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1989 C 1989 | Sbjct 89851501 C 89851501 >seq16 Length=188620566 Score = 95.1 bits (104), Expect = 2e-16 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1725 CTTTAATTTGAACGGGCTTTCCATACTTGGTGTTACTTTGCCAGTCTCTCTGGGCCCCCA 1784 |||| || ||||| || |||| |||||| || |||||||||||| || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1785 TAAATTCCTTGAAGTGCTTGAGATAATGCGGATCAACATCATCAATGACGTTATACCATA 1844 |||||||| |||| || | | | || || | ||| | |||||| |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1845 CGTCATTACTATAGACTCTTGGACTGAGATCCAAGTGACCGCATAAATAGTTGTGTGAAC 1904 | || ||| | || | ||| | | || || | ||| | |||||| || ||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1905 CCAATGACCTGGCCCACAGTGTTTTACCAGTACGACTATTACCCTCTATGACTAT--ACT 1962 ||||||| || ||||||| ||| || || || | || ||| || || | ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1963 CATGGGTCTCAAAGGCCGCGCAGCG 1987 | |||||||| || || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 199/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1691 CCAGGATTGCAGAGGAAGATTGTCGGAATGCCCCCTTTAATTTGAACGGGCTTTCCATAC 1750 || || ||||| || | |||||| || ||||| ||||| | || ||||| || || Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1751 TTGGTGTTACTTTGCCAGTCTCTCTGGGCCCCCATAAATTCCTTGAAGTGCTTGAGATAA 1810 ||| || | ||||| | || || || || ||||| || || ||||| ||| || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1811 TGCGGATCAACATCATCAATGACGTTATACCATACGTCATTACTATAGACTCTTGGACTG 1870 || || | ||||| |||| ||| || ||| || ||||| || || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1871 AGATCCAAGTGACCGCATAAATAGTTGTGTGAACCCAATGACCTGGCCCACAGTGTTTTA 1930 | |||| ||||| |||| ||||| ||| ||||| || || ||||||| |||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1931 CCAGTACGACTATTACCCTCTATGACTATACTCATGGGTCTCAAAGGCCGCGCAGCGGC 1989 | || | |||||| | ||||| | | | | ||||||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713458534704