Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011346.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq16 132 8e-28 seq13 89.7 9e-15 seq11 82.4 1e-12 >seq16 Length=188620566 Score = 132 bits (146), Expect = 8e-28 Identities = 187/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 1717 CTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1776 |||| || ||||| || |||| ||| || || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1777 TGAATTCTTTAAAGTGCTTCAGATAATGCGGATCAACGTCATCAATGACGTTGTACCACG 1836 ||||| || |||| || | | | || || | ||||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1837 CGTCGTTGCTGTAAACCTTGGGACTCAAGTCTAGGTGACCACATAAATAATTGTGTGGTC 1896 | ||||| | ||||| | ||| ||||||||| | ||||| ||||||||| ||| || Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1897 CAAGAGATCTGGCCCACACTGTCTTCCCTGTACGACTAACGCCCTCGATAACAATTGATT 1956 | | ||||| ||||||| |||||| || || | | | || || || | ||||| | Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1957 TAGGTCTCAATGGCCGCGCAGCG 1979 |||||||||||| || | |||| Sbjct 2249093 GAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 89.7 bits (98), Expect = 9e-15 Identities = 201/301 (67%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1683 CCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTAT 1742 ||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1743 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAA 1802 || ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1803 TGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAAACCTTGGGAC-- 1860 || || | |||||| |||| |||||| ||||||| | | || || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1861 TCAAGTCTAGGTGACCACATAAATAATTGTGTGGTCCAAGAGATCTGGCCCACACTGTCT 1920 | | ||| | |||||||||| || || ||| ||| | |||||| ||||||| ||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1921 TCCCTGTACGACTAACGCCCTCGATAACAATTGATTTAGGTCTCAATGGCCGCGCAGCGG 1980 | ||||| | | | | || || | ||||| || ||||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1981 C 1981 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 200/301 (66%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1683 CCTGGATTGCAGAGAAAGATAGTGGGAATCCCACCTTTAATTTGAACTGGCTTTCCGTAT 1742 ||||| ||||| || | ||| || || || || ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1743 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAA 1802 || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1803 TGCGGATCAACGTCATCAATGACGTTGTACCACGCGTCGTTGCTGTAAACCTTGGGACTC 1862 || || | |||||| |||| |||||| |||| ||| | | || || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1863 AAGTCTAGGTGACCACATAAATAATTGTGTGGTCCAAGAGATCTGGCCCACACTGTCTTC 1922 ||| | |||||||||| || || ||| ||| | |||||| ||||||| ||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1923 CCTGTAC--GACTAACGCCCTCGATAACAATTGATTTAGGTCTCAATGGCCGCGCAGCGG 1980 | ||| | || | || | | || | |||| || ||||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTAC--CTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 1981 C 1981 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8771053411320