Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_011348.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq13 174 3e-40 seq11 159 6e-36 seq16 150 3e-33 >seq13 Length=197258317 Score = 174 bits (192), Expect = 3e-40 Identities = 259/365 (71%), Gaps = 8/365 (2%) Strand=Plus/Plus Query 1562 CCAGGATTGCAAAGCACGATTGATGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTAT 1621 || || ||||| || | ||||| ||| || || ||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1622 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGATCAATTCTTTCCAGTGCTTTAGCTTT 1681 ||||| || |||||||| | || ||| || || || || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1682 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTCGAAAAGACTCGA 1741 || || || |||| | |||||| |||| ||| || || || || || || |||||| Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1742 CCAT--TGAAGTCCAGGTGTCCACTTAGATAATTATGTGGGCCTAACGCACGAGCCCACA 1799 | | ||| ||||| || |||| || || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1800 TGGTCTTCCCTGTCCTTGAATCACCTTCTACGATGATACTCAATGGTCTCTGTGGCCGCG 1859 | || || |||||||| ||||||| ||||| ||| || | ||||||| ||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1860 CAGCGGAACCTCTTCCAAAATAATCATCCGCCCACTCCTGCATCTCATCGGGAACGTTAG 1919 |||||| | |||||| || ||| ||||| | |||| || || || || |||| Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTAG 89851554 Query 1920 TGAAG 1924 ||||| Sbjct 89851555 TGAAG 89851559 >seq11 Length=168460249 Score = 159 bits (176), Expect = 6e-36 Identities = 330/490 (67%), Gaps = 6/490 (1%) Strand=Plus/Minus Query 1555 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCACCTTTAATTTGAACTGGCTT 1614 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1615 GCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGATCAATTCTTTCCAGTGCTT 1674 |||||||||||| | |||||||| | | ||| || || || || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1675 TAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTCGAAAA 1734 | || || || |||| | |||||| |||| ||| || || | | || || || Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1735 GACTCGACCATTGAAGTCCAGGTGTCCACTTAGATAATTATGTGGGCCTAACGCACGAGC 1794 |||| ||| ||||| || |||| || || |||||| || || | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1795 CCACATGGTCTTCCCTGTCCTTGAATCACCTTCTACGATGATACTCAATGGTCTCTGTGG 1854 |||||| || || | |||||| |||| ||||| || ||| | | ||||||| || Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGG 165527317 Query 1855 CCGCGCAGCGGAACCTCTTCCAAAATAATCATCCGCCCACTCCTGCATCTCATCGGGAAC 1914 ||||||||||| | ||||| || ||| ||||| || |||| || || || || Sbjct 165527316 CCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 Query 1915 GTTAGTGAAGGACGAGAGTTGAAACGGAGGAACCCACGGTTCCGGAGCCTTTTTGAATAT 1974 ||||||||| || | | || ||| ||||| || | | || ||| | | Sbjct 165527256 ATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGAC 165527197 Query 1975 CCTCTCTAGATTGGAGCGGATGTTATGATTCTGCAAGACGAAATCTTTTGGCTGTTCTTC 2034 || || || ||| || |||||| |||| ||| || | || ||| | || ||||| || Sbjct 165527196 TCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCATC 165527137 Query 2035 CCTTAAAACC 2044 || | |||| Sbjct 165527136 TCTAATAACC 165527127 >seq16 Length=188620566 Score = 150 bits (166), Expect = 3e-33 Identities = 237/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1596 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCGA 1655 |||| || ||||| || || | ||| ||||| |||| ||||||||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1656 TCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1715 ||||| |||||||| |||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1716 ACTCCACTTCATTCGAAAAGACTCGACCATTGAAGTCCAGGTGTCCACTTAGATAATTAT 1775 | ||||| || || || || || | ||| ||||| | | ||||||| |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1776 GTGGGCCTAACGCACGAGCCCACATGGTCTTCCCTGTCCTTGAATCACCTTCTACGATGA 1835 || || || | | |||||||| ||||| || || |||||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1836 T--ACTCAATGGTCTCTGTGGCCGCGCAGCGGAACCTCTTCCAAAATAATCATCCGCCCA 1893 | ||| | |||||| ||| || | |||| | | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1894 CTCCTGCATCTCATCGGGAACGTTAGTGAAGGACGA 1929 | ||||| | | || ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8307065132608